RetrogeneDB ID: retro_mluc_550

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:45747121..45748261(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000029821
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBL7
• Ensembl ID: ENSMLUG00000011861
• Aliases: None
• Description: None

Sequence

>retro_mluc_550
ATGTCTCTCTCAGACTGGCACCTGGCGGTGAAACTGGCTGACCAGCCACTTGCCCCAAAGTCTATTCTTCGGTTGCCAGA
GACAGAGCTGGGAGAATACTCACTGGGGGACTGTAGTATTTCATTTCTGAAGCAGCTTATTGCTGGCAAACTCCAGGAGT
CAGTTCCAGACCCTGAGCTGATTGATCTGATCTACTGTGGCCGGAAGCTAAAAGATGACCAGACCCTTGACTTCTATGGC
ATTCAACCTGGGTCCACAGTCCATGTTCTTCGCAAGTCCTGGCCCGAGCCTGATCAGAAACCAGAACCTGTGGACAAAGT
GGCTGCCCTGCGGGAGTTCCGGGTGCTGCACACTGCCTTGCACAGCAGCTCTTCCTACAGGGAGGCGGTCTTTAAGATGC
TCAGCAATAAGGAATCTCTGGATCAGATCATTGTAGCCACCCCAGGCCTCAGCAGTGATCCCATTGCTCTTGGGGTTCTC
CAGGACAAGGACCTTTTCTCTGTCTTTGCTGATCCCAACATGCTTGATACGTTGGTACCTGCTCACCCAGCCCTAGTCAA
TGCTATTGTCCTGGTTCTGCACTCGGTGGCAGGCAGCACGCCGCTGCCGGGGGTGGGCTCCTCTTCCCGGAGCACGCCCT
CCAGCTCTTACCGGGACATGCCAGGTCGTTTCCTGTTTGAGGGGCTCTCTGATGATGAGGACGACTTTCACCCAAGAGCC
AGGTCCATGCCCTCTAGCAGCACACCCAGCTCCCGCCCAGCGTCCTTGGGGTACAGTGGAGCTGCCGGACCCCGGCCCAT
CACCCAGAGCGAGCTGGCCACTGCCCTGGCCCTGGCCAGCACTGCAGAGAGCAGCTCTCATACACCGACTCCTGGCACCC
AGGGCCATTCCTTGGGGACCTCACCACTGTCCTCTGGTGTCGAGTCAGGGACTCCCATCACCAATGACCTCTTCAGCCAA
GCCCTGCAGCATGCCCTGCAGGCCTCTGGGCAGCCCAGCCTTCAGAGCCAGTGGCAGCCCCAGCTGCAGCAGCTGCATGA
CATGGGCATTCAGGACGATGAACTGAGCCTGCGGGCCCTACAGGCCACTTGGGGGGACATCCAAGCAGCTCTGGAACTCA
TCTTTGCCGGAGGAGCCCCA

Alignment

ORF - retro_mluc_550 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.37 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSLSDWHLAVKLADQPLAPKSILRLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKL
          MSLSDWHLAVKLADQPLAPKSILRLPETELGEYSLG..SISFLKQLIAGKLQESVPDPELIDLIYCGRKL
Retrocopy MSLSDWHLAVKLADQPLAPKSILRLPETELGEYSLGDCSISFLKQLIAGKLQESVPDPELIDLIYCGRKL

Parental  KDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAALREFRVLHTALHSSSSYREAVFKMLSNKESL
          KDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAALREFRVLHTALHSSSSYREAVFKMLSNKESL
Retrocopy KDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAALREFRVLHTALHSSSSYREAVFKMLSNKESL

Parental  DQIIVATPGLSSDPIALGVLQDKDLFSVFADPNMLDTLVPAHPALVNAIVLVLHSVAGSTPLPGADSSSR
          DQIIVATPGLSSDPIALGVLQDKDLFSVFADPNMLDTLVPAHPALVNAIVLVLHSVAGSTPLPG..SSSR
Retrocopy DQIIVATPGLSSDPIALGVLQDKDLFSVFADPNMLDTLVPAHPALVNAIVLVLHSVAGSTPLPGVGSSSR

Parental  STPSSSYRDMPGGFLFEGLSDDEDDFHPRARSMPSSSTPSSRPASLGYSGAAGPRPITQSELATALALAS
          STPSSSYRDMPG.FLFEGLSDDEDDFHPRARSMPSSSTPSSRPASLGYSGAAGPRPITQSELATALALAS
Retrocopy STPSSSYRDMPGRFLFEGLSDDEDDFHPRARSMPSSSTPSSRPASLGYSGAAGPRPITQSELATALALAS

Parental  TPESSSHTPTPGTQGHSSGTSPLSSGVQSGTPITNDLFSQALQHALQASGQPSLQSQWQPQLQQLRDMGI
          T.ESSSHTPTPGTQGHS.GTSPLSSGV.SGTPITNDLFSQALQHALQASGQPSLQSQWQPQLQQL.DMGI
Retrocopy TAESSSHTPTPGTQGHSLGTSPLSSGVESGTPITNDLFSQALQHALQASGQPSLQSQWQPQLQQLHDMGI

Parental  QDDELSLRALQATGGDIQAALELIFAGGAP
          QDDELSLRALQAT.GDIQAALELIFAGGAP
Retrocopy QDDELSLRALQATWGDIQAALELIFAGGAP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_550 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000011861	1 retrocopy	retro_mluc_550 ,
Nomascus leucogenys	ENSNLEG00000014486	1 retrocopy	retro_nleu_148,