RetrogeneDB ID: retro_mluc_552

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:47276313..47276601(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: POLR2H
• Ensembl ID: ENSMLUG00000022295
• Aliases: None
• Description: None

Sequence

>retro_mluc_552
TTTGATGTGAAAGACATTGACCCAGAGGGAAAGAAGTTGGACCAAGTGTCTTGACTGCATTGTGAGAGTGACTCTTTCAT
GATGGACCTTATCTTAGATGTAAACATTCAGATTTACCCTGTAGACTTGGGTGAGAAGTTCCGGTTGGTCATAGCCAGTA
CCTTGTGTGAAGATGGTACACTGGATGATGGTGAATACAACCCCACAGAGGATAGACCTTCCAGGGCTGACCAATTGGAG
TGTGTAAAGCATGGAGAAGTATACAAGATTGAGGGAGATGAAAGCAGC

Alignment

ORF - retro_mluc_552 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.38 %
• Parental protein coverage: 64.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTD
          FDVKDIDPEGKK.D.VS.LHCES.SF.MDLILDVNIQIYPVDLG.KFRLVIASTL.EDGTLDDGEYNPT.
Retrocopy FDVKDIDPEGKKLDQVS*LHCESDSFMMDLILDVNIQIYPVDLGEKFRLVIASTLCEDGTLDDGEYNPTE

Parental  DRPSRADQFEYVMYGKVYRIEGDETS
          DRPSRADQ.E.V..G.VY.IEGDE.S
Retrocopy DRPSRADQLECVKHGEVYKIEGDESS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_552 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000005751	1 retrocopy	retro_dnov_709,
Microcebus murinus	ENSMICG00000011294	1 retrocopy	retro_mmur_537,
Myotis lucifugus	ENSMLUG00000022295	2 retrocopies	retro_mluc_2322, retro_mluc_552 ,
Monodelphis domestica	ENSMODG00000002570	2 retrocopies	retro_mdom_1394, retro_mdom_1450,
Mus musculus	ENSMUSG00000021018	2 retrocopies	retro_mmus_3549, retro_mmus_936,
Otolemur garnettii	ENSOGAG00000001599	1 retrocopy	retro_ogar_3073,
Rattus norvegicus	ENSRNOG00000001748	2 retrocopies	retro_rnor_1377, retro_rnor_773,