RetrogeneDB ID: retro_mluc_605

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:20323233..20324052(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028370
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SLC29A1
• Ensembl ID: ENSMLUG00000005230
• Aliases: None
• Description: None

Sequence

>retro_mluc_605
CCCTCTCTGGAGCGGAATTCTCTGAGTGCTGTCTTCAACAATGTCATGATCTTATGTGCCATGCTGCCCCTGGCTGCTCT
TTGCCTGACTTGACTTTTTCCTGCATCAGAGGATACCCCAGTCCGTTCTAGTCTGGGGCAGCCTGATGGCAATCCTGCTG
GTGTTCCTGATCACTGCTATCCTGATGAAGGTGCACCTGGATGCCCTGCCCTTCTTCATCATCACAAAGATCAAGATCAT
GCCCATTAATTCATTTGGTGCCATCCTGCAGGGCAGCCTTTTGGTCTGGTCTGCCAGCTACATGGCCCCATCATGAGTGG
CCAGAGCCTGACAGGCATCTTACCTTTCTTTGCCTCAGTGACCATGATCTGCACCATCACCAGTGGCTTGGAGCCATCAG
AAAGTTCCTTTGGCTATTTTACCACAACCTGTGGGGTCATCATTTTGACCATTATCTGTTACCTGGGCCTGCCTCAGCTG
GAATGGTGCTTCTACTACCAGCAGCTCAAGCTCAAAGGGCCTAGAGAGGAGGAGACCAAGTTGGACCTCATTAGTGAAGG
AGAGGAGCCAAGAGCAGGCAAAGAGGAGTTTGAAGTTTCAGCCTCCAACTCTCAGCCCACCAACAAAAGCCACTCAATCT
AAGCCATCCTCAAATATATCTTAGTCTTAGTTCTCTCCATTGGCTTCATCTTCACAGTCACTATTGGGGAGCTTCCTGCC
ATTACCTCTGAGGTCAAGTCCAACATCGCAGGCACTAGCACCTGGGGAGACTACTTTATTCCTGTGTCCTGTTTCTTGAC
TTCCAATGTCTTTGGGTGG

Alignment

ORF - retro_mluc_605 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.18 %
• Parental protein coverage: 57.81 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PSPDQSYLSAIFNNVMTLCAMLPL-LIFACLNSFLHQRIPQSIRILGSLVAILLVFLITAILVRVPLDAL
          PS.....LSA.FNNVM.LCAMLPL.L.FA.L..FLHQRIPQS....GSL.AILLVFLITAIL..V.LDAL
Retrocopy PSLERNSLSAVFNNVMILCAMLPL>LLFA*LDFFLHQRIPQSVLVWGSLMAILLVFLITAILMKVHLDAL

Parental  PFFVITMIKIMLINSFGAILQ-GSLFGLAGLLPAHYTAPIMSGQGLAGI---FAAVAMICAIASGSELSE
          PFF.IT.IKIM.INSFGAILQ.G..FG....L......PIMSGQ.L.GI...FA.V.MIC.I.SG.E.SE
Retrocopy PFFIITKIKIMPINSFGAILQ<GQPFG----LVCQLHGPIMSGQSLTGILPFFASVTMICTITSGLEPSE

Parental  SAFGYFITACGVIILTIICYLGLPRLEFYRYYQQLKLEGPGEQETKLDLISKGEASRAGKEEFGVSAPNS
          S.FGYF.T.CGVIILTIICYLGLP.LE...YYQQLKL.GP.E.ETKLDLIS.GE..RAGKEEF.VSA.NS
Retrocopy SSFGYFTTTCGVIILTIICYLGLPQLEWCFYYQQLKLKGPREEETKLDLISEGEEPRAGKEEFEVSASNS

Parental  QPTTNSPSIRAILKNILVPALSVCFVFTITIGVFPAVTADAKSSIAGSGAWGHYFIPVSCFLTFNVFDW
          QPT..S.SI.AILK.ILV..LS..F.FT.TIG..PA.T...KS.IAG...WG.YFIPVSCFLT.NVF.W
Retrocopy QPTNKSHSI*AILKYILVLVLSIGFIFTVTIGELPAITSEVKSNIAGTSTWGDYFIPVSCFLTSNVFGW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_605 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000005230	1 retrocopy	retro_mluc_605 ,