RetrogeneDB ID: retro_mluc_651

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:25681857..25683985(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024467
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DHX16
• Ensembl ID: ENSMLUG00000008932
• Aliases: None
• Description: None

Sequence

>retro_mluc_651
CCCGGCTGGGGGCCGCCGCCTGAAATTTGGGGCCCGAGATGCCGCCTCCCAGGAGCCTAAGTACCAGCTGGTACTCGAGG
AAGAGGAGACCATCGAGTTTGTCCGGGCCACTCAGCTGCAGGGCGATGAGGAGCCGGCAGCTCCGCCCTCTCCCACCCAG
GCCCAGCAGCAGGAGTGCATCCAGGCCGTGCGCCGCAGCCTCCCCGTGTTCCCCTTCCGCGAGGAGCTCCTGGCTGCCAT
TGCGAGTCACCAGGTCCTCATCATCGAGGGCGAGACAGGCTCGGGGAAGACCACCCAGATCCCGCAGTATCTCTTTGAGG
AGGGTTATACAAAGAAGGGTCTGAAGATCGCCTGCACCCAGCCCAGGAGAGTGGCCGCCATGAGTGTGGCCGCCCGAGTT
GCTCGGGGAGATGGGCGTGAAGCTGGGGAATGAGGTGGGCTACAGCATCCGCTTTGAGGACTGCACGTCAGAGAGGACGG
TCCTCCGCTACATGACCGACGGCATGCTGCTCCGCGAGTTCCTCTCGGAGCCCGACCTGGCGAGCTACAGCGTGGTGATG
GTGGATGAGGCTCACGAGCGGACCTTGCACAAGACATTCTCTTTGGATTGATCAAAGATGTGGCTCGCTTCCGACCTGAG
CTCAAGGTCCTGGTGGCTTCGGCCACACTGGACACTGCCCGCTTTTCCACCTTCTTTGATGACGCCCCCGTCTTCCGGAT
CCCTGGACGCCGGTTTCCAGTTGACATCTTCTATACCAAGGCTCCAGAGGCCGACTACCTGGAAGCCTGTGTCGTGTCTG
TGCTGCAGATCCACGTGACGCAGCCCCCCGGGGACATCCTGGTGTTCCTGACGGGACAGGAGGAGATCGAGGCTGCCTGC
GAGATGCTCCAGGACCGCTGCCGCCGCCTGGGCTCCAAGATCCGGGAGCTGCTGGTGCTGCCCATCTACGCCAACCTGCC
CTCCGACATGCAGGCCTGCATCTTCCAGCCCACGCCCCCCGGGGCACGCAAGGTGGTTGTGGCAACCAACATCGCCGAGA
CTTCACTCACCATCGAGGGCATCATTTACGTGCTGGATCCAGGGTTCTGTAAGCAGAAGAGCTACAACCCTCGCACGGGC
ATGGAGTCACTCACGGTCACACCCTGCAGCAAGGCCTCAGCCAATCAGCGAGCGGGCCGGGCTGGCCGGGTGGCGGCCGG
GAAGTGCTTCCGCCTGTACACCGCCTGGGCCTATCAGCACGAGCTGGAGGAAACCACGGTGCCCGAGATCCAGAGGACCA
GCCTGGGCAATGTGGTGTTGCTGCTCAAGAGCCTAGGGATCCATGACCTCATGCACTTTGACTTCCTGGACCCTCCCTTG
TATGAGACCCTGCTGCTGGCGTTGGAGCAGCTGTATGCTCTGGGAGCCCTCAACCACCTTGGGGAGCTCACCACGTCTGG
TAGAAAGATGGCAGAGCTGCCAGTGGACCCCATGCTATCTAAAATGATCCTGGCTTCTGAGAAGTACAGCTGCTCAGAGG
AGATCCTGACAGTGGCCGCCATGCTGTCCGTCAACAACTCCATCTTCTACCGGCCCAAGGACAAAGTCGTCCACGCGGAC
AACGCCCGCGTCAACTTCTTCCTCCCTGGGGGGGACCACCTGGTTCTGCTAAACGTGTACACACAGTGGGCTGAGAGTGG
TTACTCTTCCCAGTGGTGCTATGAGAACTTTGTCCAGTTCAGATCGATGCGCCGAGCCCGGGATGTGCGAGAGCAGCTGG
AGGGGCTCTTGGAGCGGGTAGAAGTTGGCCTCAGTTCCTGCCAGGGGGACTATATCCGTGTCCGCAAGGCCGTCACTGCC
GGTTACTTTTACCACACAGCACGGTTGACTCGCAGCGGCTACCGCACAGTGAAACAGCAGCAGACAGTGTTCATTCACCC
CAACTCCTCCCTCTTTGAGGAACAGCCTCGCTGGCTGCGCTACCATGAACTTGTCTTGACCACCAAGGAGTTCATGCGAC
AGGTATTGGAGATTGAGAGCAGTTGGCTTCTGGAGGTGGCACCTCACTATTATAAAGCCAAGGAGCTAGAAGATCCCCAT
GCCAAGAAAATGCCCAAAAAAACAGGCAAGACACGTGAAGAGCTAGGG

Alignment

ORF - retro_mluc_651 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.35 %
• Parental protein coverage: 68.6 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  PGWGPPPGPA-GGRRPASQEPKYQLVLEEEETIEFVRATQLQGDEEPAAPPSPTQAQQQECIQAVRRSLP
          PGWG.PP....G.R..ASQEPKYQLVLEEEETIEFVRATQLQGDEEPAAPPSPTQAQQQECIQAVRRSLP
Retrocopy PGWG-PPPEI>GARDAASQEPKYQLVLEEEETIEFVRATQLQGDEEPAAPPSPTQAQQQECIQAVRRSLP

Parental  VFPFREELLAAIASHQVLIIEGETGSGKTTQIPQYLFEEGYTKKGLKIACTQPRRVAAMSVAARVAR-EM
          VFPFREELLAAIASHQVLIIEGETGSGKTTQIPQYLFEEGYTKKGLKIACTQ...........RVAR.EM
Retrocopy VFPFREELLAAIASHQVLIIEGETGSGKTTQIPQYLFEEGYTKKGLKIACTQXXXXXXXXXXXRVAR>EM

Parental  GVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHT-DILFGLIKD
          GVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLH..DILFGLIKD
Retrocopy GVKLGNEVGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHK<DILFGLIKD

Parental  VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPP
          VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPP
Retrocopy VARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVSVLQIHVTQPP

Parental  GDVLVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAE
          GD.LVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA.IFQPTPPGARKVVVATNIAE
Retrocopy GDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQACIFQPTPPGARKVVVATNIAE

Parental  TSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELE
          TSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELE
Retrocopy TSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRVAAGKCFRLYTAWAYQHELE

Parental  ETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAEL
          ETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPP.YETLLLALEQLYALGALNHLGELTTSGRKMAEL
Retrocopy ETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPLYETLLLALEQLYALGALNHLGELTTSGRKMAEL

Parental  PVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW
          PVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW
Retrocopy PVDPMLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQW

Parental  AESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAVTAGYFYHTARLTRSG
          AESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAVTAGYFYHTARLTRSG
Retrocopy AESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAVTAGYFYHTARLTRSG

Parental  YRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKK
          YRTVKQQQTVFIHPNSSLFEEQPRWL.YHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKK
Retrocopy YRTVKQQQTVFIHPNSSLFEEQPRWLRYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKAKELEDPHAKK

Parental  MPKKTGKTREELG
          MPKKTGKTREELG
Retrocopy MPKKTGKTREELG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_651 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000090	1 retrocopy	retro_mluc_1289,
Myotis lucifugus	ENSMLUG00000008932	2 retrocopies	retro_mluc_434, retro_mluc_651 ,
Monodelphis domestica	ENSMODG00000015890	1 retrocopy	retro_mdom_1892,