RetrogeneDB ID: retro_mluc_655

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:7209239..7210087(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022826
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TTC19
• Ensembl ID: ENSMLUG00000001991
• Aliases: None
• Description: None

Sequence

>retro_mluc_655
GAGGCCGAGCTCATCCGGGTGCTGAAGCGAACCACGGTGAGCATCATGAAAGATGAGCCAGAAGCGGCTGAGCTAATTTT
GCACGAGGCACTTCGTCTTGCCGTTCAGAGTGATAACAAGAAGGCCATCGTTTACACTTAGGATTTGATGGCCCACTGAG
CATTTATACGGGGTCAGCTTGAAAATGCAGAAAAACTTTTTAAAGCAACCATGAGTTACCTGCTTGGAGGGGGCATGCAA
CAGGAAGACAATGCAATAATTGAAATCTCTCTAAAGTTGGCCAGTATCTATGCTGCTCAGAATAGACAGGAATTTGCTCT
TGCTGACTATGAATTCTGCATCTCAACTCTAGAGGGAAAAATTGAAAGAGAAAAGAAATTAGCGGAAGACATTTTGTCAG
TAGAAGAGAAAGCCAACACCCACCTCCTCCTCGGCACGTGCTTAGATGCTTATGCTCGCTACCTTCTGTTCTCCAAGCAT
CATCGCAGGCACAAAGGATGTATGAAGAAGCTTTTCATGTTTCTGAAGAAATACTAGGAGTAAGACACCCACAGACCATT
GTGCTCATGAGCGACCTGGCTACCACCCTGGATGCACAAGGCCACTTTGATGAGGCCTGTGCGTATGTGCAGAGGGCGTC
AGATCTGGCAACACAAGTAGGACATCCTGAGCTGCACATGGTGCTGAGTAACCCGGCTGCAGTTCTGATGCACAGAGAAC
GATATGCACAAGCAAAAGAGATCTGCCAGGAAGCACTGAAGCAAGCAGAGCTCAAAGGAGATGAGGTTTCAATACAGCAC
ATCAGGAAAGAATTGGCCGAGCTGTCCAGAAAAAGTAGACCTTTGACT

Alignment

ORF - retro_mluc_655 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.79 %
• Parental protein coverage: 92.18 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EAEIIRLLKRAKLSIMKDEPEEAELILHEALRLAIQSDNKKAIIYTYDLMANLAFIRGQLENAEKLFKAT
          EAE.IR.LKR...SIMKDEPE.AELILHEALRLA.QSDNKKAI.YT.DLMA..AFIRGQLENAEKLFKAT
Retrocopy EAELIRVLKRTTVSIMKDEPEAAELILHEALRLAVQSDNKKAIVYT*DLMAH*AFIRGQLENAEKLFKAT

Parental  MSYLLGGGMQQEDNAIIEISLKLASIYAAQNRQEFALAGYEFCISTLEEKIEREKELAEDILSVEEKANT
          MSYLLGGGMQQEDNAIIEISLKLASIYAAQNRQEFALA.YEFCISTLE.KIEREK.LAEDILSVEEKANT
Retrocopy MSYLLGGGMQQEDNAIIEISLKLASIYAAQNRQEFALADYEFCISTLEGKIEREKKLAEDILSVEEKANT

Parental  RLLLGMCLDAYARYLLSSKQ-PSQAQRMYEKALHISEEILGERHPQTIVLMSDLATTLDAQGHFDEACAY
          .LLLG.CLDAYARYLL.SK...SQAQRMYE.A.H.SEEILG.RHPQTIVLMSDLATTLDAQGHFDEACAY
Retrocopy HLLLGTCLDAYARYLLFSKH<SSQAQRMYEEAFHVSEEILGVRHPQTIVLMSDLATTLDAQGHFDEACAY

Parental  VQRASDLARQVGHPELHMVLSNLAAVLMHRERYAQAKEIYQEALKQAKLKRDEVSIQHIRKELAELSRKS
          VQRASDLA.QVGHPELHMVLSN.AAVLMHRERYAQAKEI.QEALKQA.LK.DEVSIQHIRKELAELSRKS
Retrocopy VQRASDLATQVGHPELHMVLSNPAAVLMHRERYAQAKEICQEALKQAELKGDEVSIQHIRKELAELSRKS

Parental  RPLT
          RPLT
Retrocopy RPLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_655 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000030206	1 retrocopy	retro_fcat_686,
Myotis lucifugus	ENSMLUG00000001991	1 retrocopy	retro_mluc_655 ,
Tursiops truncatus	ENSTTRG00000002021	2 retrocopies	retro_ttru_275, retro_ttru_539,