RetrogeneDB ID: retro_mluc_66

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429777:9488461..9489622(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023672
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002211
• Aliases: None
• Description: None

Sequence

>retro_mluc_66
ATGAACCAGACAGCGAAAAACGGATTGGAGTACATCAGGACTCCAGAGCCAGAAATACGGCTCAGAAAAGGACTCCAACT
TGATGGTACAAGGAGAGGTGATAATGACAATCACCAAGGAGATTTGGAGCCTGTTTTAGAGGCATCTGTTCTTTCTACCC
ATCATAAAAAAAGCTCTGAGGAACGTGAGTGTAATGATGAAGCTTCTCAGGAAGAAGAGGGGTTTATGGGCATGTCCCCT
CTCTTACAAGCCCATCATGCTATGGAAAGAATGGAAGAGTTTGTTTGCAAGGTTTGGGAAGGTCGATGGCGAGTAATCCC
TCATGATGTCCTACCAGACTGGCTCAAGGATAATGATTACCTTTTACATGGACACCGGCCCCCTATGCCTTCTTTCCGGG
CCTGTTTTCAGAGCATTTTCAGAATACACACAGAGACAGGCAACATCTGGACACATCTCTTAGGTTGTGTATTCTTCCTG
TGCCTGGGGATCTTTTATATGTTTCGCCCAAACATCTTCTTTGTGGCCCCTCTGCAAGAAAAGGTGGTCTTTGGGTTATT
CTTCTTGGGGGCCATTCTCTGCCTTTCTTTTTCATGGCTCTTCCACACAGTCTACTGCCACTCAGAAGGGGTCTCCCGAC
TCTTCTCTAAACTGGATTACTCTGGTATTGTTCTTCTGATTATGGGAAGTTTTGTTCCTTGGCTTTATTATTCGTTCTAC
TGTAACCCACAACCTTGCTTCATCTATTTGATTATCATCTGTGTGCTGGGCATCGCAACCATTATAGTCTCCCAGTGGGA
CATGTTTGCCACCCCCCAGTATCGAGGAGTACGAGCAGGAGTGTTTTTGGCACTTGGCCTGAGTGGAATCATTCCTGCCT
TGCACTATATCATCTTGGAGGGGTTCCTGAAGGCTGCCACCATAGGACAGATGGGCTGGTTGATGCTGATGGCCAGTCTC
TATATTACGGGGGCTGCCCTGTATGCTGCCCGCATTCCCGAACGCTTCTTTCCTGGCAAGTGTGACATCTGGTTTCACTC
TCATCAGCTCTTCCACATCTTTGTGGTTGCTGGCGCTTACGTTCACTTCCACGGAGTCTCAAACCTCCAGGAGTACCGCT
TCATGATCGGCGGAGGCTGCAGTGAAGAGGATGCACTGTGA

Alignment

ORF - retro_mluc_66 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.93 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNQTAKNGLEYIRTPEPEIRLRKGLQLDGTRRGDNDNHQGDLEPVLEASVLSTHHKKSSEERECNDEASQ
          MNQTAKNGLEYIRTPEPEIRLRKGLQLDGTRRGDNDNHQGDLEPVLEASVLSTHHKKSSEERECNDEASQ
Retrocopy MNQTAKNGLEYIRTPEPEIRLRKGLQLDGTRRGDNDNHQGDLEPVLEASVLSTHHKKSSEERECNDEASQ

Parental  EEEGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDYLLHGHRPPMPSFRACFKSIF
          EEEGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDYLLHGHRPPMPSFRACF.SIF
Retrocopy EEEGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDYLLHGHRPPMPSFRACFQSIF

Parental  RIHTETGNIWTHLLGCVFFLCLGIFYMFRPNIFFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEG
          RIHTETGNIWTHLLGCVFFLCLGIFYMFRPNIFFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEG
Retrocopy RIHTETGNIWTHLLGCVFFLCLGIFYMFRPNIFFVAPLQEKVVFGLFFLGAILCLSFSWLFHTVYCHSEG

Parental  VSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYLIIICVLGIAAIIVSQWDMFATPQYRGVRAG
          VSRLFSKLDYSGI.LLIMGSFVPWLYYSFYCNPQPCFIYLIIICVLGIA.IIVSQWDMFATPQYRGVRAG
Retrocopy VSRLFSKLDYSGIVLLIMGSFVPWLYYSFYCNPQPCFIYLIIICVLGIATIIVSQWDMFATPQYRGVRAG

Parental  VFLGLGLSGIIPALHYIISEGFLKAATIGQIGWLMLMASLYITGAALYAARIPERFFPGKCDIWFHSHQL
          VFL.LGLSGIIPALHYII.EGFLKAATIGQ.GWLMLMASLYITGAALYAARIPERFFPGKCDIWFHSHQL
Retrocopy VFLALGLSGIIPALHYIILEGFLKAATIGQMGWLMLMASLYITGAALYAARIPERFFPGKCDIWFHSHQL

Parental  FHIFVVAGAFVHFHGVSNLQEFRFMIGGGCSEEDAL
          FHIFVVAGA.VHFHGVSNLQE.RFMIGGGCSEEDAL
Retrocopy FHIFVVAGAYVHFHGVSNLQEYRFMIGGGCSEEDAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_66 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009050	1 retrocopy	retro_btau_320,
Choloepus hoffmanni	ENSCHOG00000012668	1 retrocopy	retro_chof_1133,
Callithrix jacchus	ENSCJAG00000000683	3 retrocopies	retro_cjac_2912, retro_cjac_3290, retro_cjac_504,
Loxodonta africana	ENSLAFG00000021355	1 retrocopy	retro_lafr_249,
Microcebus murinus	ENSMICG00000005653	1 retrocopy	retro_mmur_818,
Myotis lucifugus	ENSMLUG00000002211	1 retrocopy	retro_mluc_66 ,
Myotis lucifugus	ENSMLUG00000016102	2 retrocopies	retro_mluc_1275, retro_mluc_200,