RetrogeneDB ID: | retro_mluc_665 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL429771:4794..6108(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMLUG00000025960 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | WARS | ||
| Ensembl ID: | ENSMLUG00000011737 | ||
| Aliases: | None | ||
| Description: | tryptophanyl-tRNA synthetase [Source:HGNC Symbol;Acc:12729] |
Retrocopy-Parental alignment summary:
>retro_mluc_665
GCAGCCCAGGATGAAATTGATTCTGCACTGAAGAGGCTGTTATTGCTAAAAATGAGCTACAACGTGGCCATGGGGGAGAA
CTACAAGGTGGACTGCCTTCCAGAGAACCTTGCACCTGGGTTAGTGGCCCCGGTGCCATGGAAGCTGAATTGGATTTTGT
GGACCCCTGAACTGTACAGAGGAACAGTGCAAAAGGCAGTGACTATGACAAGCTCATCGTTCTGTTTGGAACCAGTAACA
TTGACCAAGAGCTGATAAACAGAAGAGAGAGAGCCAGGGGCCAGAGACCACACCGCTTCCTGCACAGATGCACCTTCTTC
TGACACAGAGACATGAACCAAGTCCTCGATACCTATGAAAACAAGAAGCTGTTTCGCTTGTATTTGGGCAGGGGGCCCTC
TTCCGAAGCCATGCATGTAGGCCACCACATCCCATTCATTTTCACAAAGTGGCTGCAGGACATGTTCAATGTGCTCTTGC
TCATCCAGATGACCGATGACTAGAAGTACCTGTGGAAGACCTGACCCTGGACCAGGCCTATGGTTACTCCGTGGAAAATG
CCAAGGACATCATCACCTGCAGCTTTCACATCAACAAGCCCATCTTCTCTGACCTCGACTACCTGGGGGTGAGCCCAGAC
TTCTACAAGAACATGGTGAAGATCAGAAATATGTGACCTTCAACCAAGTGAAAGGCATTTTTGGCTTCGCCTACAGTGAC
TGCATGGGTAACATCAGCTTTCCTGCCATCCAGGCTGCTCCCTCCTTCAGCAACTCATTCTCACAGATCTTCCGGGGTGA
GTTGGACATCCAGGGCCTCATCCCCTGTGCCATCAACCAGGATCCTTACTTCAGAATGACAAGAGATATCACTCCCAGGA
TCTGCTATCCTAAACCACCCTGCTACACTCAACTTTCTTCCCCTCCCTGCAGGGGACTCAGACCCAAAGGAGTGCCAGCA
ACCCCAACTCCCCCATCTTCCTCACAGACACAGCCAAGCAGATCAAGACCAAGGTCAACAAGCATGCTTTTTCTGGAGGG
AAAGACACCATCAAGGAAGCACAAGCAGTTTGGGGAAAATGGCCACGTGGACGTGTCCTTCATGTACATGACCTTCTTCC
TTGAGGATGAGGACAAGCTGGAGCAGATCAGGAAGGATTACAGCAGTGGAGCCATGCTCACCTGGGAGCTCAAGAAGGAT
CTCGTGGAGGTCCGGCAGCCGCTCCTGGCGGAGCACCAGGCCAGGTGCAAGGAGGCCAGGGAGGAGATAGTCAAAGTGTT
CTTGACCCCCCGGAAGCTGTCCTATGACTTTCAA
ORF - retro_mluc_665 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.13 % |
| Parental protein coverage: | 92.84 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | ASKDELDSAVKKLLSLKMSYKAAMGEDYKADC-PPNNPAPAGDSGPDATEAEEDFVDPWTVQTSSAKGVD |
| A..DE.DSA.K.LL.LKMSY..AMGE.YK.DC.P...P.....SGP.A.EAE.DFVDP.TVQ..SAKG.D | |
| Retrocopy | AAQDEIDSALKRLLLLKMSYNVAMGENYKVDC<PSREPC-TWVSGPGAMEAELDFVDP*TVQRNSAKGSD |
| Parental | YDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAM |
| YDKLIV.FG.S.ID.ELINR.ERA.GQRPHRFL.R..FF.HRDMNQVLD.YENKK.F.LY.GRGPSSEAM | |
| Retrocopy | YDKLIVLFGTSNIDQELINRRERARGQRPHRFLHRCTFF*HRDMNQVLDTYENKKLFRLYLGRGPSSEAM |
| Parental | HVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWK-DLTLDQAHGYAVENAKDIIACGFDINKTFIFSDL |
| HVGH.IPFIFTKWLQD.FNV.L.IQMTDD.KYLWK.DLTLDQA.GY.VENAKDII.C.F.INK..IFSDL | |
| Retrocopy | HVGHHIPFIFTKWLQDMFNVLLLIQMTDD*KYLWK<DLTLDQAYGYSVENAKDIITCSFHINKP-IFSDL |
| Parental | DYMGMSPGFYRNVVKI-QKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFGDKTDVQCLI |
| DY.G.SP.FY.N.VKI.QK.VTFNQVKGIFGF..SDC.G.ISFPAIQAAPSFSNSF.QIF....D.Q.LI | |
| Retrocopy | DYLGVSPDFYKNMVKI<QKYVTFNQVKGIFGFAYSDCMGNISFPAIQAAPSFSNSFSQIFRGELDIQGLI |
| Parental | PCAIDQDPYFRMTRDVAPRIGYPKP-ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHA |
| PCAI.QDPYFRMTRD..PRI.YPKP..LLHSTFFP.LQG.QT..SAS.PNS.IFLTDTAKQIKTKVNKHA | |
| Retrocopy | PCAINQDPYFRMTRDITPRICYPKP<TLLHSTFFPSLQGTQTQRSASNPNSPIFLTDTAKQIKTKVNKHA |
| Parental | FSGGRDTIEE-HRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKELVEVLQPLIAEH |
| FSGG.DTI.E.H.QFG.N..VDVSFMY.TFFLED.DKLEQIRKDY.SGAMLT.ELKK.LVEV.QPL.AEH | |
| Retrocopy | FSGGKDTIKE>HKQFGENGHVDVSFMYMTFFLEDEDKLEQIRKDYSSGAMLTWELKKDLVEVRQPLLAEH |
| Parental | QARRKEVTEEIVKEFMTPRKLSYDFQ |
| QAR.KE..EEIVK.F.TPRKLSYDFQ | |
| Retrocopy | QARCKEAREEIVKVFLTPRKLSYDFQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_665 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000011737 | 3 retrocopies |
retro_mluc_1007, retro_mluc_665 , retro_mluc_996,
|
| Otolemur garnettii | ENSOGAG00000032196 | 3 retrocopies |