RetrogeneDB ID:

retro_mluc_683

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429771:18421277..18421949(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ACTR10
Ensembl ID:ENSMLUG00000007553
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mluc_683
GCTGGCATGCCTAAGCCTATCAAAGTTGTTCAATATAATATCAATACAGAAGAATTATATTTCTACCTAAAGGAATTTAT
CCACATACTGTATTTCAGACATCTGTTGGTGAATCCCAGAGATCGCCGAGTCGTGGTTATTGAATCAGTACTATGTCCTT
CCCACTTCAGAGAGACACTCACTCACGTTCTCTTCAAGTATTTTGAGGTTCTGTCTGTCTTGCTTGCTCCAAGCCATCTA
ATGGCTCTTCTGATACTTGGGATAAACTCTGCTATGGTCCTGGATTGTGGATATAGAGAAAGCCTGGTGTTACCTATATA
TGAAGGAATCCCAATACTAAATTGCTGGGGAGCACTCCTCCTAGGAGGAAAAGCTCTGCACAGGGAGTTGGAAACTCAAC
TATTGGAGCAATGTACTGTTGACAGAGGTGCTGCTAAAAAACAGAGCCTTCCCTCTGTGATGGGTTCAGTTCCAGAAGGT
GTCTTAGAGGACATTAAAGTGCGCACTTGCTTTGTAAGTGATCTGAAATGTGGACTAAAAATCCAAGCAGCAAAATTTAA
TATCGATGGGAATACTGAGCGTCCCTCACCACCCGCAAATGTTGACTACCCATTAGATGGAGAGAAGATTTTACATGTCC
TTGGATCAATCAGGGATTCGGTTGTGGAAATT

ORF - retro_mluc_683 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95.09 %
Parental protein coverage: 53.72 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAGMPKPIKVVQYNINTEELYSYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEV
AGMPKPIKVVQYNINTEELY.YLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLT.VLFKYFEV
RetrocopyAGMPKPIKVVQYNINTEELYFYLKEFIHILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTHVLFKYFEV
ParentalPSVLLAPSHLMALLTLGINSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHRELETQLLEQCTV
.SVLLAPSHLMALL.LGINSAMVLDCGYRESLVLPIYEGIP.LNCWGAL.LGGKALHRELETQLLEQCTV
RetrocopyLSVLLAPSHLMALLILGINSAMVLDCGYRESLVLPIYEGIPILNCWGALLLGGKALHRELETQLLEQCTV
ParentalDTGAAKEQSLPSVMGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERPSPPPNVDYPLDGEKI
D.GAAK.QSLPSVMGS.PEGVLEDIKVRTCFVSDLK.GLKIQAAKFNIDGNTERPSPP.NVDYPLDGEKI
RetrocopyDRGAAKKQSLPSVMGSVPEGVLEDIKVRTCFVSDLKCGLKIQAAKFNIDGNTERPSPPANVDYPLDGEKI
ParentalLHVLGSIRDSVVEI
LHVLGSIRDSVVEI
RetrocopyLHVLGSIRDSVVEI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_683 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000112611 retrocopy
Myotis lucifugus ENSMLUG00000007553 1 retrocopy
retro_mluc_683 ,
Otolemur garnettii ENSOGAG000000003801 retrocopy
Tursiops truncatus ENSTTRG000000135211 retrocopy



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