RetrogeneDB ID: retro_mluc_685

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:19431519..19432653(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000014645
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NCL
• Ensembl ID: ENSMLUG00000014547
• Aliases: None
• Description: None

Sequence

>retro_mluc_685
CCTGTCAAAGAAGCACCTGGAAAACGAAAGAAGGAAATGGCCAAACAGAAAGCTGCTCCTGAGGCCAAGAAACAGAAAGT
GGAAGCCACAGAACCGACTACGGCTTTTAATCTCTTTGTTGGAAACCTGAACTTCAGCAAGTCTGCTCCTGAATTAAAAA
CGGGTATCAGTGATGTTTTTGCTAAAAACGATCTTGCTGTTGTGGATGTCAGAATTGGTGTGTCCAGGAAGTTTGGCTAT
GTGGATTTTGAATCTGCTGAGGACCTGGAAAAAGCCTTAGAACTCACTCATTTAAAAGTCTTTGGCAATAAAATTAAACT
AGAAAAACCAAAGGGAAAAGACAGTAAAAAAGATCAAGATGCAAGAACACTTTTGGCAAAAAGTCTGCCTTATAAAGTTA
CTCAGGATGAATTAAAAGAAGTGTTTGAAGATGCTATGGAGATCAGATTAGTCAGCAAGGATGGAAAAAGTAAAGGGATT
GCTTATATTGAATTTAAGACAGAAGCTGATGCAGAGAAAACCTTGGAAGAAAAGCAAGGGACAGAAATAGATGGGCGATC
CATTTCTCTGTACTATACTGGAGAGAAAGGTCAAAATAAAGACCATAGATATGGAAAGAACAGCACTTGGAGTGGTGAAT
CAAAAACTCTGGTTTTAAGCAACCTTTCCTACAGTGCAACAGAAGAAACTCTTCAGGAAGTATTTGAAAAGGCAACTTTT
ATCAAAGTGCCCCAGAACCAAAATGGCGAATCTAAAGGGTATGCATTTATAGAATTTGCTTCATTTGAAGATGTTAAAGA
AGCTTTAAATTCCTGTAATAAAAAAGAAATTGAGGGCAGAGCAATCAGGCTGGAATTGCAAGGACCCAGAGGATTGCCTA
ATGCAAGAAGCCAGCCATCCAAAACTCTATTTGTCAAAGGTCTGTCGAGGAGACTACGGAAGAGACATTGAAGGAGTCCA
TTTGATGGCTCTGTCTGGGCAAGGATAGTCACTGACTGGGATATGGGCTCTTCCAAAGGGTTTGGTTTTGTAGACTTCAA
CAGTGAGGAAGATGCCAAAGCTGCTAAGGAGGCCATGGAAGATGGTGAAATTGATGGAAACAAAGTTACTTTGGATTGGG
CCAAGCCTAAGGGT

Alignment

ORF - retro_mluc_685 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.53 %
• Parental protein coverage: 52.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PVKEAPGKRKKEMSKQKAAPEAKKQKVEATEPTTAFNLFVGNLNFSKSAPELKTGISDVFAKNDLAVVDV
          PVKEAPGKRKKEM.KQKAAPEAKKQKVEATEPTTAFNLFVGNLNFSKSAPELKTGISDVFAKNDLAVVDV
Retrocopy PVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTAFNLFVGNLNFSKSAPELKTGISDVFAKNDLAVVDV

Parental  RIGVSRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKE
          RIGVSRKFGYVDFESAEDLEKALELT.LKVFGN.IKLEKPKGKDSKKD.DARTLLAK.LPYKVTQDELKE
Retrocopy RIGVSRKFGYVDFESAEDLEKALELTHLKVFGNKIKLEKPKGKDSKKDQDARTLLAKSLPYKVTQDELKE

Parental  VFEDAMEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDHRGGKNSTW
          VFEDAMEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQN.DHR.GKNSTW
Retrocopy VFEDAMEIRLVSKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNKDHRYGKNSTW

Parental  SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR
          SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNG.SKGYAFIEFASFED.KEALNSCNK.EIEGR
Retrocopy SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGESKGYAFIEFASFEDVKEALNSCNKKEIEGR

Parental  AIRLELQGPRGSPNARSQPSKTLFVKGLS-EETTEETLKES-FDGSVRARIVTDRETGSSKGFGFVDFNS
          AIRLELQGPRG.PNARSQPSKTLFVKGLS.EETTEETLKES.FDGSV.ARIVTD...GSSKGFGFVDFNS
Retrocopy AIRLELQGPRGLPNARSQPSKTLFVKGLS<EETTEETLKES>FDGSVWARIVTDWDMGSSKGFGFVDFNS

Parental  EEDAKAAKEAMEDGEIDGNKVTLDWAKPKG
          EEDAKAAKEAMEDGEIDGNKVTLDWAKPKG
Retrocopy EEDAKAAKEAMEDGEIDGNKVTLDWAKPKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_685 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000016174	1 retrocopy	retro_btau_1713,
Myotis lucifugus	ENSMLUG00000014547	1 retrocopy	retro_mluc_685 ,
Otolemur garnettii	ENSOGAG00000027852	1 retrocopy	retro_ogar_1417,
Tursiops truncatus	ENSTTRG00000009094	2 retrocopies	retro_ttru_1887, retro_ttru_51,