RetrogeneDB ID: retro_mluc_70

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430683:55269..56679(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028903
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002172
• Aliases: None
• Description: None

Sequence

>retro_mluc_70
ATGTCCCGCCGCAAGGCCGGCTGCATGCCCCGCCGAGTAGCCCCCGAGCCCGCAGCCCACACCGACGATGAGACGGAGAT
GGGGGACCTGGTCATCGATGTGAAGCCCGAGCCGCATCCTCAGCCCCTACAGGCCGCGGGGCTGCAGCGGGGTTCCCCAA
AGGAAGTGCCCGCGCCCAGCCGCCTCGAGGGCGCACCCGGCTCCTGCCCTACCCTGGTGCCCGCCGTCGGTCCCCTCCTC
GCCCTCGGCTTGCAGAACCAGCCGGCGCCGTGGACTTCTCTGGTCCCTCATCCTCACGACCGCCAGCCCCGGACTGACAG
ACACCCAGACAGGTTGCTCTGCGGCCTCTGCCTGCGGACCTTCCCGCTGGAGGCCATGGCGGCTTTCAGGAACCACAAGC
AGCAGGGCTGTCAGCCCCCTCCAGGCCCCAGCCCTGGCCCGGACTCAGAACTTGAGAACCCGAAGGCCTTGACTTGCCTC
CGCTGTGGCCGACGGTTCACCGAGGCCTGGGAACTGCTGCGCCATGCCCAGTGGGACCACGGACTGTCCATCTACCGGAC
GGAATCCGAGGCCCCAGAGACCCCGCTGCTGGGCCTGGCCGAGGTGGCTGCAGCCATGCCAGCAGCGGTGGTGGGGCAGG
AAGTGGAGGCCAAGGGCTCCCGGGCGCACAGCCTCCCCCGGCGGAGCCCCACCTGCTCTGTGTGCATGAAGACCCTCAGC
TCCTTCAGCAACCTCAAGGTGCACATGCGCTCGCACACGGGCGAGCGGCCCTACGCCTGTGACCAGTGTTCTTACGCCTG
TGCCCAGAGCAGCAAGCTCAACCGCCACAAGAAGACCCACCAGCGGCTGCAGCCTCAGAGCCGGGACACGGCCAAGGCCA
GTCAGGAACAGGCCTCAGCTGCCCCTCCGGAGCCAGCTGCCCCAGCCAGGGCTCTCCTGTGCAGCCGTGAAGGGGCTGGA
GCTGCCGACACAGTAGGCGTGCAGGAACCTGGGGTTCCAGGTGGTGGAGCTCAGGCTGGTCCTGGTGGGGACGGTTGCGG
CGTCGCCATCAAGGAAGAGAGAATCAGCTCTGCCCAGATCCCAGAGAAGTTGCCTAAGAAGATTCCAAAGACAGCGGGCA
AGCGCCACGGGCCCGGGGGCAGCTGTGAGTTCTGCGGGAAACGTTTCACCCACAGCAGCAACCTGACTGTGCACCGGCGC
TCACACACCGGGGAGCGGCCCTATACTTGCGAGCTCTGCCCCTATGCCTGTGCCCAGAGCAGCAAGCTGAACCGCCACCG
CCGCGTACACGGCCTGGGGCCCGGCGGGGCCCGCTTTGAGTGCCCCCACTGCCGCGTGCCCTTCGGCCTGCAGGCCACCC
TGGACAAACACCTGCGGCAGACGCACCGCCAAGCAGGCGGGGAGGCCTGA

Alignment

ORF - retro_mluc_70 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.4 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSRRKAGCMPRRVDPEPAAHTDDDETEMGDLVIDVKPEPHSWPLQAARLQRGSPKEVPAPGRLEGAPRSC
          MSRRKAGCMPRRV.PEPAAHT.DDETEMGDLVIDVKPEPH..PLQAA.LQRGSPKEVPAP.RLEGAP.SC
Retrocopy MSRRKAGCMPRRVAPEPAAHT-DDETEMGDLVIDVKPEPHPQPLQAAGLQRGSPKEVPAPSRLEGAPGSC

Parental  PSLMPAVGTLLALGLQNQPAPWTSLVPNPHDRQPWTDKHPDTLTCGLCLQTFPLKAITAFMDHKKQGCQP
          P.L.PAVG.LLALGLQNQPAPWTSLVP.PHDRQP.TD.HPD.L.CGLCL.TFPL.A..AF..HK.QGCQP
Retrocopy PTLVPAVGPLLALGLQNQPAPWTSLVPHPHDRQPRTDRHPDRLLCGLCLRTFPLEAMAAFRNHKQQGCQP

Parental  SRGPSPCPDSELEDLKALTCLRCGRQFTEAWKLLRHAQWDHGLSIYQTESEAPEAPLLGLAEVAAAM-SA
          ..GPSP.PDSELE..KALTCLRCGR.FTEAW.LLRHAQWDHGLSIY.TESEAPE.PLLGLAEVAAAM..A
Retrocopy PPGPSPGPDSELENPKALTCLRCGRRFTEAWELLRHAQWDHGLSIYRTESEAPETPLLGLAEVAAAMPAA

Parental  VVGQEVEAKGSQANSLPRRSPTCSVCMKTLSSFSNLKVHMRSHTGERPYACDQCSYACAQSSKLNRHKKT
          VVGQEVEAKGS.A.SLPRRSPTCSVCMKTLSSFSNLKVHMRSHTGERPYACDQCSYACAQSSKLNRHKKT
Retrocopy VVGQEVEAKGSRAHSLPRRSPTCSVCMKTLSSFSNLKVHMRSHTGERPYACDQCSYACAQSSKLNRHKKT

Parental  HQQLQPQSPYTAKASQEQASAAPPEPAAHAAAPARTLLCSREGAGAADTAGVQEPGAPGGGAQAGPGGDG
          HQ.LQPQS..TAKASQEQASAAPPEPAA....PAR.LLCSREGAGAADT.GVQEPG.PGGGAQAGPGGDG
Retrocopy HQRLQPQSRDTAKASQEQASAAPPEPAA----PARALLCSREGAGAADTVGVQEPGVPGGGAQAGPGGDG

Parental  CGVAIKKERINSAQIPEKLPKKTPKTVGKSHGPGGSCEFCGKRFTNSSNLTVHRRSHTGERPYTCELCPY
          CGVAIK.ERI.SAQIPEKLPKK.PKT.GK.HGPGGSCEFCGKRFT.SSNLTVHRRSHTGERPYTCELCPY
Retrocopy CGVAIKEERISSAQIPEKLPKKIPKTAGKRHGPGGSCEFCGKRFTHSSNLTVHRRSHTGERPYTCELCPY

Parental  ACAQSSKLNRHRRMHGLGPGGARFECPHCRVPFGLRATLDKHLRQKHPQAGGEA
          ACAQSSKLNRHRR.HGLGPGGARFECPHCRVPFGL.ATLDKHLRQ.H.QAGGEA
Retrocopy ACAQSSKLNRHRRVHGLGPGGARFECPHCRVPFGLQATLDKHLRQTHRQAGGEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_70 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002172	4 retrocopies	retro_mluc_2424, retro_mluc_45, retro_mluc_70 , retro_mluc_9,