RetrogeneDB ID: retro_mluc_713

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429772:13197047..13197538(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PBK
• Ensembl ID: ENSMLUG00000009596
• Aliases: None
• Description: None

Sequence

>retro_mluc_713
GCAAGAGGGTTAAAGTATCTGTACCAAGAGAAGAAATTGCGTCATGGAGACATAAAGTCTTCAAATGTTGTATTTAAAGG
TTATTTTGAAACAAGTAAAATCTATGATGTGGGAGTGTCTCTACCATTGGACATGACTGGGACTGACCCTGAGGCCTATT
GTATTGGCACTGAGCCTCGGAAACCCAAGGAAGCTTTGGAGAATGGTATTTTACTGGCAAGGCAGATGTATCTGCCTTTG
GCCTAGTTCTGTGGGAAATGACCTTGTCTATTTCACACATGACTCTCTCAGATGATGATGATGAAGATGAAACTTTTGAT
GAAAGTGACTTTGATGGTGAAACATACTATGCAGCTTTGGGAAGTAGGCCACCTATTAATATGGAAGAACTGGATAACAT
GCACCAGAAGGTAACTGAACTCTCCTCTGTATGCACTAATGAAAACTCTAAAGATCCTCCTCCTTCTGCACACATTGCTG
AAGCTTTGAAA

Alignment

ORF - retro_mluc_713 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.27 %
• Parental protein coverage: 52.47 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ARGLKYLHQDKKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTVTDPEACYIGTEPWKPKEALEE
          ARGLKYL.Q.KKL.HGDIKSSNVV.KG.FET.KI.DVGVSLPLD..MT.TDPEA..IGTEP.KPKEALE.
Retrocopy ARGLKYLYQEKKLRHGDIKSSNVVFKGYFETSKIYDVGVSLPLD--MTGTDPEAYCIGTEPRKPKEALE-

Parental  NGII-TDKADIFAFGLTLWEMMTLCIPHITLADDDDYDEDKTFDESDFDDEAYYAALGTRPPLNMEELDE
          NGI..T.KAD..AFGL.LWEM.TL.I.H.TL.DDDD..ED.TFDESDFD.E.YYAALG.RPP.NMEELD.
Retrocopy NGIL<TGKADVSAFGLVLWEM-TLSISHMTLSDDDD--EDETFDESDFDGETYYAALGSRPPINMEELDN

Parental  TYQKVIELFSVCTNEDPKDRPSAAHIVEALE
          ..QKV.EL.SVCTNE..KD.P..AHI.EAL.
Retrocopy MHQKVTELSSVCTNENSKDPPPSAHIAEALK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_713 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021069	1 retrocopy	retro_btau_150,
Canis familiaris	ENSCAFG00000008369	1 retrocopy	retro_cfam_1694,
Dipodomys ordii	ENSDORG00000014896	1 retrocopy	retro_dord_697,
Myotis lucifugus	ENSMLUG00000009596	1 retrocopy	retro_mluc_713 ,
Monodelphis domestica	ENSMODG00000015986	1 retrocopy	retro_mdom_245,
Mus musculus	ENSMUSG00000022033	1 retrocopy	retro_mmus_2452,
Otolemur garnettii	ENSOGAG00000009887	1 retrocopy	retro_ogar_3495,
Tupaia belangeri	ENSTBEG00000002239	1 retrocopy	retro_tbel_3290,