RetrogeneDB ID: retro_mluc_760

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:4856507..4857233(-)
• Located in intron of: ENSMLUG00000009121

Retrocopy information

• Ensembl ID: ENSMLUG00000003048
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: STX17
• Ensembl ID: ENSMLUG00000011745
• Aliases: None
• Description: None

Sequence

>retro_mluc_760
ATGTCTAAAGATGAAGAAAAAGTGAAATTACGCCATCTTGAACTAGCTATCCAGAAATTCATTAAAATAGTAATCCCTAC
AGACCTGGAAAGGTTAAGAAGGCACCAGATAAATATTGAGAAGTATCAGAGATGCAGAATCAGGGACAAGTTGCACAAAG
AGCATATCAATGGGGGATGTGCCCATGTGCAGTTCAGTAACTCCACTCCAATATGGAGAAGCTTTGTTGGAAAGTCCAGA
AAGATGACCTAGTACTTCTGAGGAGAGTGATAGATCCTGGTTAAAGAAGCAGTAGCAGCAGGCAGCAGTGGAATTTCTCC
AGCTCCATCAGGAATCTGTAGAAGAACTTGAGAAACAATTTAATGATGAAGAAACTTCATTACAGCCTTCTTTGACTCGG
TCTATGACTGTTGGTGGAGCATTTCACACTACTGAAACTGAAGCTGATCCTCAAAGTATGACTCAGATATATGCATTGCC
TGAAATCCCTCAAGATCAATATGCTGCAGAATCATGGGAAACCTAGAAGCGAACCTAATTGAACTTAGCCAACTGGTCAC
AGAATTATCTCTCCTAGTGAATTCTCAGCAGGAGAAGATTGACAGTATTGAAGACCATGTCAACAGTGCTTCTGTGAATG
TTCAAGAGGGAACCAGAAACTTGGGGAAGGCTGAAAAATACAACCTGGCAATTCTGCCTGTGGCAGGTACATTCCTCAGA
GGAGCG

Alignment

ORF - retro_mluc_760 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.33 %
• Parental protein coverage: 80.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MSDDEEKVKLRRLEPAIQKFIKIVIPTDLERLRKHQINIEKYQRCRIWDKLHEEHINAGRTVQQLRSNI-
          MS.DEEKVKLR.LE.AIQKFIKIVIPTDLERLR.HQINIEKYQRCRI.DKLH.EHIN.G....Q......
Retrocopy MSKDEEKVKLRHLELAIQKFIKIVIPTDLERLRRHQINIEKYQRCRIRDKLHKEHINGGCAHVQFSNST<

Parental  REMEKLCLKVRKDDLVLLRRMIDP-VKEAAAAG-AAEFLQLRQESVEELEKQFHDEETLLQPSLTRSMTV
          ..MEKLC.KV.KDDLVLLRR.IDP.VKEA.AAG.A.EFLQL.QESVEELEKQF.DEET.LQPSLTRSMTV
Retrocopy SNMEKLCWKVQKDDLVLLRRVIDP>VKEAVAAG>AVEFLQLHQESVEELEKQFNDEETSLQPSLTRSMTV

Parental  GGAFHTTEAEADPQSMTQIYALPEIPQDQNAAESWET-LEADLIELSQLVTEFSLLVNSQQEKIDSIEDH
          GGAFHTTE.EADPQSMTQIYALPEIPQDQ.AAESWET.LEA.LIELSQLVTE.SLLVNSQQEKIDSIEDH
Retrocopy GGAFHTTETEADPQSMTQIYALPEIPQDQYAAESWET<LEANLIELSQLVTELSLLVNSQQEKIDSIEDH

Parental  VNSAAVNVEEGTRNLGKAAKYKLAILPVAGALLGGA
          VNSA.VNV.EGTRNLGKA.KY.LAILPVAG..L.GA
Retrocopy VNSASVNVQEGTRNLGKAEKYNLAILPVAGTFLRGA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_760 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008016	1 retrocopy	retro_btau_1534,
Choloepus hoffmanni	ENSCHOG00000013030	1 retrocopy	retro_chof_131,
Myotis lucifugus	ENSMLUG00000011745	1 retrocopy	retro_mluc_760 ,
Tursiops truncatus	ENSTTRG00000016920	1 retrocopy	retro_ttru_899,