RetrogeneDB ID: retro_mluc_789

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429775:5838157..5838929(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000007418
• Aliases: None
• Description: None

Sequence

>retro_mluc_789
ATTATAAGTGTCTTGCCCTTGAAAGGCCAGAAACAAATAATTCACCTCGATTTAAAACTTACAGCTGATGTAGGCCTAGG
GGGGTTCCCAGATGTTGGGAAATCCTTTTTGCTAAGTCAGATTTCTCATGCAACACCTGCCATTACAGATTATGCATTTA
CAACAGGGAAGCCTGAACTTGGAAAGATGTATAAAGACTTCAAACAGATAACAGTAGCCCATCTTCCTGGCTTAATGGAA
GGAGCCCCTATAAACAAAGGAATGGGCCACACATTCCTCAGGCACATAGAAAGAACTAAGCTACTGCTTTTGTTTTTGTC
GATATTTCTGGATTTCAGCTTTCATCCCTAAATCAATACAGAACTGCCTTTGAAATGATAGTACTGCTTACGGAAGAGTT
GGTGTTGTACAAAGAGAAAATTCAGACAAAACCTGCCTTTCTGCTGTTGATACAATGGACTTGTTAGACGTCCAAGATAA
ATTCCATGTACTGGTGAACCAACTCCAGAATCCTACAGATTTGCTGCATTTATTTGGGAAAAAAAAAGATTTCAGAGAGG
ACTGTGGAGTTACAACATATCATCCCCACCTCTGCAATCAGTGGAGAAGGAATTGACGAATTAAAGAACTGCATAAGGAA
ACCTCTGGATGAACATGCCAACGGGGAAAATAATACATATCATAAGAAATATTTGCTTACTTTACAGATTTCAGTATGAT
ATCTTATAGTCAGCCACCAGCAAAGGATTGTACTACTAGTTCCAGAATGAAT

Alignment

ORF - retro_mluc_789 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.92 %
• Parental protein coverage: 67.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LTNFLPLKGQRRIIHLDLKLIADVGLVGFPNAGKSSLLSKISHAKPAVADYAFTTLQPELGKIMYKDFKQ
          ....LPLKGQ..IIHLDLKL.ADVGL.GFP..GKS.LLS.ISHA.PA..DYAFTT..PELGK.MYKDFKQ
Retrocopy IISVLPLKGQKQIIHLDLKLTADVGLGGFPDVGKSFLLSQISHATPAITDYAFTTGKPELGK-MYKDFKQ

Parental  ILVADLPGLIEGAHVNKGMGHKFLKHVERTKQLL-FV-VDVSGFQLSSRTPYRTAFETVLLLTKELELYD
          I.VA.LPGL.EGA..NKGMGH.FL.H.ERTK.LL.FV.VD.SGFQLSS...YRTAFE...LLT.EL.LY.
Retrocopy ITVAHLPGLMEGAPINKGMGHTFLRHIERTKLLL<FVFVDISGFQLSSLNQYRTAFEMIVLLTEELVLYK

Parental  EEVRAKPALL-AVNKMDLPDAQNKFHELMNQLQNPKDFLHLF-QSKMIPERTMEFEHIIPISAVTGEGID
          E....KPA.L.AV..MDL.D.Q.KFH.L.NQLQNP.D.LHLF.....I.ERT.E..HIIP.SA..GEGID
Retrocopy EKIQTKPAFL<AVDTMDLLDVQDKFHVLVNQLQNPTDLLHLF>XXXXISERTVELQHIIPTSAISGEGID

Parental  ELKNCIRKSLDEHADRENDAYHKKQFLNLQIS-NTVSHSEPLSRNAVTSSRMD
          ELKNCIRK.LDEHA..EN..YHKK..L.LQIS....S.S.P......TSSRM.
Retrocopy ELKNCIRKPLDEHANGENNTYHKKYLLTLQIS<SMISYSQPPAKDCTTSSRMN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_789 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014212	1 retrocopy	retro_cjac_563,
Myotis lucifugus	ENSMLUG00000007418	1 retrocopy	retro_mluc_789 ,
Mus musculus	ENSMUSG00000040464	1 retrocopy	retro_mmus_3183,
Oryctolagus cuniculus	ENSOCUG00000014847	1 retrocopy	retro_ocun_1558,
Otolemur garnettii	ENSOGAG00000010568	1 retrocopy	retro_ogar_431,
Sus scrofa	ENSSSCG00000015305	1 retrocopy	retro_sscr_661,