RetrogeneDB ID: retro_mluc_796

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:1350235..1351387(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025564
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PRMT2
• Ensembl ID: ENSMLUG00000007631
• Aliases: None
• Description: None

Sequence

>retro_mluc_796
AGTTTTCTGAGAGGAGAGAAAATTCTCATCCTGAGACAAACGACTGCTGACTGGTGGTGGGGCGAGCGCGCCGGTTACTG
TGGATACATACCCGCGAACCACCTTGGGAAGGACCTGGAGGAGTGTGACCCCGAGGACACCTGGCAGGATGAGGAGTACT
TCGGCAGCTACGGAACCCTGAAACTTCACCTGGAGATGTTGACAGACCAGCCACGAACAACTAAATATCACCACGTGATC
CTGCAGAACAGGGCGTCCCTCAAAGACAAAGTGATTCTGGATGTCGGCTGTGGGACCGGGATCATCAGCCTCTTCTGTGC
ACATTATGCGCAGCCCAGAGCAGTGTACGCGGTGGAGGCCAGCGAGATGGCCCAGCACACGGGGCAGCTGGTCATGCAGA
ATGGCTTCGCCGACATCATCACCGTGTTCCAGCAGAAGGTGGAGGATGTGGTGCTGCCGGAGAAGGTGGACGTGCTGGTG
TCCGAGTGGATGGGGACCTGCCTGCTGTTTGAGTTCATGATTGAGTCCATCCTGTACGCCCGGGATGCATGGCTGAAGGA
GGGTGGGATCATCTGGCCGACCACTGCCGCACTGCACCTCGTGCCCTGCAGTGCTGACAAAGACTACCGCAGCAAGGTTC
TCTTCTGGGACAACGCCTATGAGTTCAACCTCAGCGCTCTCAAATCGTTAGCAATTAAGGAGTTTTTTTCGAAGCCCAAG
TATAACCACATTTTGAAACCAGAAGACTGTCTCTCTGAGCCGTGCACTATATTACAGCTGGACATGAGAACGGTGCAGAT
CGCTGAACTGGAGACAATGAAAGGCGAGCTGTGCTTTGATATCAAGAAAGCCGGCACTCTGCATGGGTTTACGGCCTGGT
TCAGTGTCCGCTTTCAGAACCTGGAGGAGGAGGAGCCACAGCTGGTGCTGAGCACAGGTCCATTTCATCCCACCACCCAC
TGGAAGCAGGTGCTGTTTATGATGGACGAGCCCGTCCCCGTCCACGCAGGGGATGTGCTCACAGGCTCGATTGTGCTGCA
GAGAAACCCAGTGTGGAGGAGGCACATGTCCGTCGCTCTGAGCTGGTCTGTCACTTCCAGACAGGACCCCACGTTGCAGA
GAGTTGGAGAAAAAGTCTTTCCGATCTGGAGA

Alignment

ORF - retro_mluc_796 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100.0 %
• Parental protein coverage: 88.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SFLRGEKILILRQTTADWWWGERAGYCGYIPANHLGKDLEECDPEDTWQDEEYFGSYGTLKLHLEMLTDQ
          SFLRGEKILILRQTTADWWWGERAGYCGYIPANHLGKDLEECDPEDTWQDEEYFGSYGTLKLHLEMLTDQ
Retrocopy SFLRGEKILILRQTTADWWWGERAGYCGYIPANHLGKDLEECDPEDTWQDEEYFGSYGTLKLHLEMLTDQ

Parental  PRTTKYHHVILQNRASLKDKVILDVGCGTGIISLFCAHYAQPRAVYAVEASEMAQHTGQLVMQNGFADII
          PRTTKYHHVILQNRASLKDKVILDVGCGTGIISLFCAHYAQPRAVYAVEASEMAQHTGQLVMQNGFADII
Retrocopy PRTTKYHHVILQNRASLKDKVILDVGCGTGIISLFCAHYAQPRAVYAVEASEMAQHTGQLVMQNGFADII

Parental  TVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEGGIIWPTTAALHLVPCSADKDYR
          TVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEGGIIWPTTAALHLVPCSADKDYR
Retrocopy TVFQQKVEDVVLPEKVDVLVSEWMGTCLLFEFMIESILYARDAWLKEGGIIWPTTAALHLVPCSADKDYR

Parental  SKVLFWDNAYEFNLSALKSLAIKEFFSKPKYNHILKPEDCLSEPCTILQLDMRTVQIAELETMKGELCFD
          SKVLFWDNAYEFNLSALKSLAIKEFFSKPKYNHILKPEDCLSEPCTILQLDMRTVQIAELETMKGELCFD
Retrocopy SKVLFWDNAYEFNLSALKSLAIKEFFSKPKYNHILKPEDCLSEPCTILQLDMRTVQIAELETMKGELCFD

Parental  IKKAGTLHGFTAWFSVRFQNLEEEEPQLVLSTGPFHPTTHWKQVLFMMDEPVPVHAGDVLTGSIVLQRNP
          IKKAGTLHGFTAWFSVRFQNLEEEEPQLVLSTGPFHPTTHWKQVLFMMDEPVPVHAGDVLTGSIVLQRNP
Retrocopy IKKAGTLHGFTAWFSVRFQNLEEEEPQLVLSTGPFHPTTHWKQVLFMMDEPVPVHAGDVLTGSIVLQRNP

Parental  VWRRHMSVALSWSVTSRQDPTLQRVGEKVFPIWR
          VWRRHMSVALSWSVTSRQDPTLQRVGEKVFPIWR
Retrocopy VWRRHMSVALSWSVTSRQDPTLQRVGEKVFPIWR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_796 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007631	1 retrocopy	retro_mluc_796 ,
Tupaia belangeri	ENSTBEG00000008289	1 retrocopy	retro_tbel_716,