RetrogeneDB ID: retro_mluc_842

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429779:8135492..8137038(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025889
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: G6PD
• Ensembl ID: ENSMLUG00000008210
• Aliases: None
• Description: Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G1PB07]

Sequence

>retro_mluc_842
ATGGCAGAGCAGGTGGACCTGAGCCGGACCCAGGTGTGCGGGATCCTGCGGGAAGAGCTGTACCGGGGTGATGACTTCCA
TCAATCCGAAACACATATCCTCATCATCATGGGGGCATCGGGTGACCTGGCCAAGAAGAAGATCTACCCCACCATCTGGT
GGCTGCTCCGGGACGGCCTCCTGCCTGACAACACCTTCGTCGTGGGCTATGCCCGCTCTCGCCTCACCGTGGCTGACATT
CGTCAGCAGAGCGAGCCCTTCTTCAAAGCCACCCCCGAGGAGGAGGCCAAGCTGGAGGAGTTCTTTGCCCGCAACTCCTA
CGTGTCTGGGCCAGTACGATCAAGCGGCCTCCTATGAGCACCTCAATGACCACATAAACGCCCTCTGCCAGGGGTCCCAG
GCCAACCGCCTCTTCTACCTGGCCTTGCCCCCCACTGTCTACGAGGCCGTCACCAAGAACATCCGAGAGACCTGCATGAG
CCAGACGGGCTGGAACCGCATCATTGTAGAGAAGCCCTTCGGGAAGGACCTGCAGAGCTCCGACCGCCTGTCCAACCACA
TCTCCTCCCTGTTCTGTGAGGACCAGATCTACCGCATCGACCACTACCTGGGCAAGGAGATGGTCCAGAACCTGATGGTG
CTGAGGTTTGCCAACAGGATCTTTGGCCCCATCTGGAACCGGGACAATGTCGCCTGCGTCATCCTCACCTTCAAGGAGCC
CTTTGGTATTGAGGGCCGCGGGGGCTACTTCGATGAATTTGGGATCATCCGGGACGTGATGCAGAACCACCTCCTGCAGA
TGCTGTGTCTGGTGGCCATGGAGAAGCCAGCCTCCACGGACTCGGACGACGTCCGCAATGAGAAGGTCAAGGTGTTGAAA
TGCATCTCAGAGGCGCAGTTGAAAAATGTGGTGTTGGGCCAGTACGTGGGCAATCCCAAGGGGGAGGGCGAGGCCACCAA
AGGGTACCTGGACGACCCCACGGTGCCCCGGGGATCCACCACTGCCACCTTCGCAGCTGTTGTCCTCTATGTGGAAAACG
AGAGGTGGGATGGGGTGCCCTTCATCCTGCGCTGCGGCAAAGCCCTGAACGAGCGCAAGGCCGAGGTGCGCCTGCAGTTC
CGCGACGTGGCCGGCGACATCTTCCAGCACCAGTGCAAGCGCAACGAGCTGGTGATCCGTGTGCAGCCCAACGAGGCCGT
GTACGCCAAGATGATGACCAAGAAGCCCGGCATGTTCTTCAACCCCGAGGAGTCCGAGCTGGACCTCACCTACGGCAACA
GATACAAGAACGTGAAGCTCCCCGATGCCTATGAGCGCCTCATCCTGGACGTGTTCTGTGGGAACCAGATGCACTTTGTG
CGCAGCGACGAGCTCCGGCAGGCCTGGCGGGTCTTCACGCCGCTGCTGCACCAGATCGAGCGCGAGAAGCCGCAGCCCAT
CCCCTACGTTTACGGCAGCCGAGGTCCAGCGGAAGCAGATGAGCTGATGAAGAGAGTGGGCTTCCAGTATGGGGGCACTT
ACAAATGGGTGACACCCCACAAGCTC

Alignment

ORF - retro_mluc_842 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.12 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAEQVDLSRTQVCGILREELYQGDAFHQSETHVFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGY
          MAEQVDLSRTQVCGILREELY.GD.FHQSETH..IIMGASGDLAKKKIYPTIWWL.RDGLLP.NTF.VGY
Retrocopy MAEQVDLSRTQVCGILREELYRGDDFHQSETHILIIMGASGDLAKKKIYPTIWWLLRDGLLPDNTFVVGY

Parental  ARSRLTVADIRKQSEPFFKATPEEKARLEEFFARNSYVSG-QYDQAASYQHLNDHINALCQGSQANRLFY
          ARSRLTVADIR.QSEPFFKATPEE.A.LEEFFARNSYVSG.QYDQAASY.HLNDHINALCQGSQANRLFY
Retrocopy ARSRLTVADIRQQSEPFFKATPEEEAKLEEFFARNSYVSG>QYDQAASYEHLNDHINALCQGSQANRLFY

Parental  LALPPTVYEAVTKNIRETCMSQTGWNRIIVEKPFGKDLQSSDRLSNHISSLFCEDQIYRIDHYLGKEMVQ
          LALPPTVYEAVTKNIRETCMSQTGWNRIIVEKPFGKDLQSSDRLSNHISSLFCEDQIYRIDHYLGKEMVQ
Retrocopy LALPPTVYEAVTKNIRETCMSQTGWNRIIVEKPFGKDLQSSDRLSNHISSLFCEDQIYRIDHYLGKEMVQ

Parental  NLMVLRFANRIFGPIWNRDNVACVILTFKEPFGTEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPAST
          NLMVLRFANRIFGPIWNRDNVACVILTFKEPFG.EGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPAST
Retrocopy NLMVLRFANRIFGPIWNRDNVACVILTFKEPFGIEGRGGYFDEFGIIRDVMQNHLLQMLCLVAMEKPAST

Parental  DSDDVRNEKVKVLKCISEAQLKNVVLGQYVGNPKGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERW
          DSDDVRNEKVKVLKCISEAQLKNVVLGQYVGNPKGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERW
Retrocopy DSDDVRNEKVKVLKCISEAQLKNVVLGQYVGNPKGEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERW

Parental  DGVPFILRCGKALNERKAEVRLQFRDVAGDIFQQQCKRNELVIRVQPNEAVYTKMMTKKPGMFFNPEESE
          DGVPFILRCGKALNERKAEVRLQFRDVAGDIFQ.QCKRNELVIRVQPNEAVY.KMMTKKPGMFFNPEESE
Retrocopy DGVPFILRCGKALNERKAEVRLQFRDVAGDIFQHQCKRNELVIRVQPNEAVYAKMMTKKPGMFFNPEESE

Parental  LDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIEREKPQPIPYVYGSRGP
          LDLTYGNRYKNVKLPDAYERLILDVFCG.QMHFVRSDELR.AWR.FTPLLHQIEREKPQPIPYVYGSRGP
Retrocopy LDLTYGNRYKNVKLPDAYERLILDVFCGNQMHFVRSDELRQAWRVFTPLLHQIEREKPQPIPYVYGSRGP

Parental  AEADELMKRVGFQYEGTYKWVNPHKL
          AEADELMKRVGFQY.GTYKWV.PHKL
Retrocopy AEADELMKRVGFQYGGTYKWVTPHKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_842 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016775	2 retrocopies	retro_cjac_4026, retro_cjac_499,
Equus caballus	ENSECAG00000014994	1 retrocopy	retro_ecab_492,
Myotis lucifugus	ENSMLUG00000008210	1 retrocopy	retro_mluc_842 ,
Mus musculus	ENSMUSG00000031400	1 retrocopy	retro_mmus_174,
Sus scrofa	ENSSSCG00000025108	1 retrocopy	retro_sscr_818,