RetrogeneDB ID: retro_mluc_859

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:6151096..6152195(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EDC3
• Ensembl ID: ENSMLUG00000016382
• Aliases: None
• Description: None

Sequence

>retro_mluc_859
GTCTCTCGGCCTTTCCACAATGGAGTGAAGTGCCTTGTGCCAGAATTCACCTTCAGTGCAGGTGACATTATGGAGTTAAA
ATTTCTGGAGATACCAGGTCCTGGAGAAAACCAACATTTTGGAGACCTTCATAAGACAGAATTAGGCCCTTCTGTTATTG
GGTACCAAGTGGGTATCAATCAGAATGGCACAGGTAGGTTGGTCAAGAAGCTAACCTCTTCTAGCTGTGCCCCTCAAAAC
ATCCCTAAGAGAACAGATGTGAAGAGCCAGGATGCTGCCATTTCCTTGCAGCAGCAGCTGTGTTCCAAGAGCTATGTGGA
CAGGCACATGGAGCCTTTGAGTCAGTCCAAAAGTTTCTGTCATTGGCACAACTCCTGGTCATCTAACAGCAGGCACTCAA
ATCAGGCAACTCCAAAGAAAAATTGTTTAAAGCGTGGCCAAATGAAGAATAAAGACGATGGGTGCTTTGGGGATGATATT
GAAGAGATCCCAGACACAGATTTTGATTTTGAAGGGAACCTTACCCTATTTGACAAAGTATCTGTGTTTGAGGAGATTGA
TACATTTGGGAGGAAAAGTGGTACCCATTCCAGGGGTATCCCAAATGAAAGGCCTACTCACTACCGTCACGATGAGAATA
TCCTGGAGTCAGAGCCCATAGTCTACGCACGGATCACAGTGCCCCACAATGTGAGCAAGGAGTTCTGCATAGACTCTGGC
TTGCTTGTCCCAAGTGTTTCCTATGAGCTACATAAAAAGCTGTTATCTGTGGCTGAAAAGCATGGGTTGACTCTGGAGTA
GAGACTGGAGATGACAGGCATGTCAGCCAGTCAGATGTCACTTGACTCTACTCGGAGGACCCAACAGGTTGAATCCCAAA
AATGTTCACCAGAAGCCTACAGTGGCTTTGCTATGTGGGCCCCATGTGAAGGGGGCTCAGGGTGTCAGCTGTGGAAGACA
CCTAGCCAACCATGATGTCCAGGTGACCTTCTTCCTGCCCAACTTTGTCAAGATGCTTGAGTCCATCACCAACGAGCTGT
CTCTCTTCAGCAAGACCCAAGACCAACAAGTGTCTAGTCTCAAAGATCTGCTCACTAGT

Alignment

ORF - retro_mluc_859 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.26 %
• Parental protein coverage: 72.16 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LTRPFHNGVKCLVPEVTFRAGDIMELKILEIPGPGENQHFGDLHQTELGPSGIGYQVGINQNGTGRLVKK
          ..RPFHNGVKCLVPE.TF.AGDIMELK.LEIPGPGENQHFGDLH.TELGPS.IGYQVGINQNGTGRLVKK
Retrocopy VSRPFHNGVKCLVPEFTFSAGDIMELKFLEIPGPGENQHFGDLHKTELGPSVIGYQVGINQNGTGRLVKK

Parental  PTSSSSAPQNIPKRTDVKSQDAAVSPQQQQCSKSYVDRHVEPLSQSKSFRRRHNSWSSSSRHPNQATPKK
          .TSSS.APQNIPKRTDVKSQDAA.S.QQQ.CSKSYVDRH.EPLSQSKSF...HNSWSS.SRH.NQATPKK
Retrocopy LTSSSCAPQNIPKRTDVKSQDAAISLQQQLCSKSYVDRHMEPLSQSKSFCHWHNSWSSNSRHSNQATPKK

Parental  SGVKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNERPTRYRH
          ...K.GQMKNKDD.CFGDDIEEIPDTDFDFEGNL.LFDK..VFEEIDT..R.SGT.SRGIPNERPT.YRH
Retrocopy NCLKRGQMKNKDDGCFGDDIEEIPDTDFDFEGNLTLFDKVSVFEEIDTFGRKSGTHSRGIPNERPTHYRH

Parental  DENILESEPIVYRRITVPHNVSKEFCTDSGLVVPSVSYELHKKLLSVAEKHGLTLERRLEMTGVCASQMA
          DENILESEPIVY.RITVPHNVSKEFC.DSGL.VPSVSYELHKKLLSVAEKHGLTLE.RLEMTG..ASQM.
Retrocopy DENILESEPIVYARITVPHNVSKEFCIDSGLLVPSVSYELHKKLLSVAEKHGLTLE*RLEMTGMSASQMS

Parental  -LTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLF
          .LTLLGGPNRLNPKNVHQ.PTVALLCGPHVKGAQG.SCGRHLANHDVQV..FLPNFVKMLESITNELSLF
Retrocopy >LTLLGGPNRLNPKNVHQKPTVALLCGPHVKGAQGVSCGRHLANHDVQVTFFLPNFVKMLESITNELSLF

Parental  SKTQGQQVSSLKAADLPTS
          SKTQ.QQVSSLK..DL.TS
Retrocopy SKTQDQQVSSLK--DLLTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_859 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000016382	1 retrocopy	retro_mluc_859 ,