RetrogeneDB ID: retro_mluc_870

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:6236164..6236768(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OGFRL1
• Ensembl ID: ENSMLUG00000007329
• Aliases: None
• Description: None

Sequence

>retro_mluc_870
GTGTGCACTGAGCAGGGTGCTGATTCCACTGAAGCAACTGCTAAACCACAGATGTTTTTAAGCTGTGAGGGATTTGTGCA
AATACCCACACCATACCCAAACTTCAAAGATATCCGATAGCAAAATGACTTGAGTAATCCTCACTCTTATAAGAATAAAA
TTCCATTTAAGGCAGATGGTGTTTATATCGAATAAGTTCTAAATAAGTGGAGAGAGGATTATGAAAAACTGGAGCACAAC
CACACTTACATTCAATGGCTTTTCCCCCAGAGGGAACAAGGCTTGAACTTTTATGCTAAAGAACTAACTACAGATGAAAT
TGAGGAATTCAAACAATCAAAAGAAACAATTAGAAGATTCCTACTGGCTTATAAAATTATGTTAGAATTTGGGGGGGGTG
GTGCAGAAGATAAAACTAGGAATTTCGCTGGGTCTGTTAACTGGCAAGAAAGATTTCAGCATCGGAATGAGTCCCAGCGC
AACTATTTAAAAAGAATCACCCATATCTTAAAAGCCTTGGTGACTTCAATATGAAAGTTATAAATCTCCTTGTGTAAAAT
GTATTCTTCATGAAGCTCTTGTGGAAATAAGAACTCCAAAACTT

Alignment

ORF - retro_mluc_870 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.76 %
• Parental protein coverage: 52.88 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ITASQGADSTEATAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNK
          ....QGADSTEATAKP...F............YPNFKDIR.QNDLSN...YKNKIPFK.DGVYIE.VLNK
Retrocopy VCTEQGADSTEATAKP-QMFLSCEGFVQIPTPYPNFKDIR*QNDLSNPHSYKNKIPFKADGVYIE*VLNK

Parental  WKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFILAYRMMLEFFGIKLIDKT
          W..DYEKLEHNHTYIQWLFP.REQGLNFYAKELTT.EIEEFK..KE.IRRF.LAY..MLEF......DKT
Retrocopy WREDYEKLEHNHTYIQWLFPQREQGLNFYAKELTTDEIEEFKQSKETIRRFLLAYKIMLEFXXXGAEDKT

Parental  GNVARALNWQERFQHLNESQHNYL-RITRI-LKSLGE-LGYESFKSPLVKFILHEALVENTIPNI
          .N.A...NWQERFQH.NESQ.NYL.RIT.I.LKSLG..L.YES.KSP.VK.ILHEALVE...P..
Retrocopy RNFAGSVNWQERFQHRNESQRNYLKRITHI<LKSLGD<LQYESYKSPCVKCILHEALVEIRTPKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_870 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000002600	1 retrocopy	retro_chof_1780,
Callithrix jacchus	ENSCJAG00000003635	1 retrocopy	retro_cjac_2757,
Myotis lucifugus	ENSMLUG00000007329	1 retrocopy	retro_mluc_870 ,