RetrogeneDB ID: | retro_mluc_937 | ||
Retrocopy location | Organism: | Microbat (Myotis lucifugus) | |
| Coordinates: | GL429784:14018778..14019085(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SLC38A6 | ||
| Ensembl ID: | ENSMLUG00000002362 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mluc_937
ATGAAGGTGCCCTGGGGGATCATCAACATGAAGATGGGCTGGTACATCTCTTCCCAGCAGCCTGAGGAAGTGGAGGTGGA
AGAGTTGAGCCTGTTTCTAAGCAACAAACTCCACAGACAGAGATCCCCAGGTGTTTCATTTGGTTTCTCAGTGTTTAATT
TGGTAAATGCCATCATGGGAGTGGCATTTTTGGCTTAGCTTATGTATGGCTCATACCGATATCCTTGGATTTAGTTTCTT
GTTGCTGGTAAATGCTCACCTGGCTTCATTCTTAGTCTATCTCCTGCTTAGTATGTGTACTCAGACA
ORF - retro_mluc_937 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.9 % |
| Parental protein coverage: | 99.06 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MEAPWGVINVQPGCYVSSQQPEEAEAQAEELSPLLSNELHRQGSPGVSYGFSVFNLMNAIM-GSGILGLA |
| M..PWG.IN...G.Y.SSQQPEE.E...EELS..LSN.LHRQ.SPGVS.GFSVFNL.NAIM.GSGI.GLA | |
| Retrocopy | MKVPWGIINMKMGWYISSQQPEEVEV--EELSLFLSNKLHRQRSPGVSFGFSVFNLVNAIM<GSGIFGLA |
| Parental | FV-MAHTGILGFSFLLLIVALLASFSVHLLLSMCIQT |
| .V.MAHT.ILGFSFLLL..A.LASF.V.LLLSMC.QT | |
| Retrocopy | YV<MAHTDILGFSFLLLVNAHLASFLVYLLLSMCTQT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_937 was not experimentally validated.
Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000002362 | 1 retrocopy |
retro_mluc_937 ,
|