RetrogeneDB ID: retro_mluc_975

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:3619296..3620142(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023622
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: DAPK2
• Ensembl ID: ENSMLUG00000000714
• Aliases: None
• Description: None

Sequence

>retro_mluc_975
CTGCATCCCAACATCATCACGCTGCACGACGTGGTGCTCATGCTGGAGCTAGTGTCCGGAGGAGAGCTCTTTGACCTTCT
GGCCCAGAAGGAGTCACTGAGTGAGGAGGAGGCCACCAGCTTCATTAAGCAGATCCTGGACGGAGTGAACTACCTTCATG
CCAAGAAAATTGCTCACTTTGATCTCAAGCCAGAAAACATTATGTTGTTAGACAAGAATATTCCCATTCCACACATCAAG
CTAATTGACTTTGGCCTTGCTCACGAAATAGAAGATGGAGTTGAATTTAAGAACATTTTTGGCACACCAGAATTTGTTGC
TCCAGAGAATGTGAACTATGAGCCCCTGGGCCTGGAGGCTGACATGTGGAGCATAGGCGTCATCACCTACATCCTCCTAA
GTGGAGCATCCCCTTTCCTGGGAGACACGAAGCAGGAGACACTGGCAAATATCACAGCGGTGAGTTACGACTTTGATGAG
GAATTCTTCAGTCAGACCAGTGAGCTGGCCAAGGACTTCATTCGGAAGCTTCTGGTTAAAGAGACCCGGAAACGGCTTAC
AATCCAAGAGGCTCTCGGACACCCCTGGATCATGCCGGTGGACAACCAGCAAGCCCTGGAGCGCAGGGAGTCCGTGGTCA
ACCTGGAGAACTTCAAGAAGCAGTATGTCCGCAGAAGGTGGAAGCTCTCTTTCAGCATTGTCTCCTTGTGTAACCACCTC
ACCCGCTCCCTGATGAAGAAGGTGCACCTGAGGCCAGATGAGAGCCTGAGGAATTGTGAGAGTGACACAGAGGAGGACAT
CGCCAAGAGGAAAGCCCTCCACCCCCGGAGGAGGAGCAGTACCTCC

Alignment

ORF - retro_mluc_975 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.39 %
• Parental protein coverage: 82.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LHDVFENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHAKKIAHFDLKPENIMLL
          LH.......DVVL.LELVSGGELFD.LAQKESLSEEEATSFIKQILDGVNYLHAKKIAHFDLKPENIMLL
Retrocopy LHPNIITLHDVVLMLELVSGGELFDLLAQKESLSEEEATSFIKQILDGVNYLHAKKIAHFDLKPENIMLL

Parental  DKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFL
          DKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPE.VNYEPLGLEADMWSIGVITYILLSGASPFL
Retrocopy DKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPENVNYEPLGLEADMWSIGVITYILLSGASPFL

Parental  GDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQALVRRE
          GDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEAL.HPWI.PVDNQQAL.RRE
Retrocopy GDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALGHPWIMPVDNQQALERRE

Parental  SVVNLENFKKQYVRRRWKLSFSIVSLCNHLTRSLMKKVHLRPDESLRNCESDTEEDIAKRKALHPRRRSS
          SVVNLENFKKQYVRRRWKLSFSIVSLCNHLTRSLMKKVHLRPDESLRNCESDTEEDIAKRKALHPRRRSS
Retrocopy SVVNLENFKKQYVRRRWKLSFSIVSLCNHLTRSLMKKVHLRPDESLRNCESDTEEDIAKRKALHPRRRSS

Parental  TS
          TS
Retrocopy TS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_975 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000714	1 retrocopy	retro_mluc_975 ,