RetrogeneDB ID: retro_mluc_981

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:5645806..5646684(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000548
• Aliases: None
• Description: None

Sequence

>retro_mluc_981
GGTGTGGCTGGGCCTGAGAAAGCAGCCGCAGCAGCTTCCGGGGAGGCGTGTCCCCTGACAACTCCATCGAACACTCGGAC
TATTGCAACAAACTTGCCCAGATTCACCATATCTACCATTCGGAGCTGGAGAAGTATGAGCAGGCATGTAACGAGTTCAC
AACCCACATCATGAACCTGCTGAGGGAGCAGAGCCGCACGAGGCCTGTGGCACCCAAGGAGATGGGGCGGGTGGGAGCAT
CATACACCGTAAGTTCAGTGCCATCCAGATGCAGCTCAAGCAGAGCACCTGCAAGGCCGTCATGATCCTGCGCACTTGGT
TCCTGGATGCCAGACGGAAACGCCGGAACTTCAGCAAACAGGCCACCAAGGTCCTAAATGAGTATTTCTATTCCCACCTG
AGTAACCCGTATCCCAGTGAGGAGGCCTAGGAGGAGCTTGCCAAGAAGTGTGGCATCACCGTCTCTCAGGTCTCCAACTG
GTTTGGCAACAAGCAGATTCGCTATAAGAAAAATAGCAGAAAGTTTCAAGAGGAGGGAAACATCTATGCCATCAAGACCG
CCTTGTCTGTCACCCAGGGGGCCATAGCCGCACCAGCTCCCTGACACCCCCTTCCTCCGCAGGGCTCTTTCAATCTTTCA
GGGTCCGGAGACATGTTTCTGGGGATGCCCGGGCTCAACGGAGATTCCTACCCTGCTTCCCAGATGGAATCACTCAACAC
TCGATGGGCCCAGGCGGCTACGGAAATAACCTTGGGGAGGCCAGATGAACAGCCCTCAGGAAATGAGGGCAAACGGTGGC
TGGAAGGAGGCTGTGACCCCATCCTCAGTGACGTCCCCAACAGAAGGACCAGGGAGCGCTCATTCTGACACTTCCCAC

Alignment

ORF - retro_mluc_981 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.72 %
• Parental protein coverage: 69.07 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  GGSAAAAAAAAASG-GGVSPDNSIEHSDYRSKLAQIRHIYHSELEKYEQACNEFTTHVMNLLREQSRTRP
          G......AAAAASG.GGVSPDNSIEHSDY..KLAQI.HIYHSELEKYEQACNEFTTH.MNLLREQSRTRP
Retrocopy GVAGPEKAAAAASG<GGVSPDNSIEHSDYCNKLAQIHHIYHSELEKYEQACNEFTTHIMNLLREQSRTRP

Parental  VAPKEMERMV-SIIHRKFSAIQMQLKQSTCEAVMILRSRFLDARRKRRNFSKQATEVLNEYFYSHLSNPY
          VAPKEM.R...SIIHRKFSAIQMQLKQSTC.AVMILR..FLDARRKRRNFSKQAT.VLNEYFYSHLSNPY
Retrocopy VAPKEMGRVG<SIIHRKFSAIQMQLKQSTCKAVMILRTWFLDARRKRRNFSKQATKVLNEYFYSHLSNPY

Parental  PSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAVKTAVSVTQGGHSRTSSPTPPSSA
          PSEEA.EELAKKCGITVSQVSNWFGNK.IRYKKN..KFQEE.NIYA.KTA.SVTQG.......P.P....
Retrocopy PSEEA*EELAKKCGITVSQVSNWFGNKQIRYKKNSRKFQEEGNIYAIKTALSVTQGA---IAAPAP*HPL

Parental  GSGGSFNLSGSGDMFLGMPGLNGDSYPASQVESL-RHSMGPGGYGDSLG-GGQMYSPREMRANGGWQEAV
          ...GSFNLSGSGDMFLGMPGLNGDSYPASQ.ESL..HSMGPGGYG..LG.GGQM.SP.EMRANGGW.EAV
Retrocopy PPQGSFNLSGSGDMFLGMPGLNGDSYPASQMESL<QHSMGPGGYGNNLG<GGQMNSPQEMRANGGWKEAV

Parental  TPSSVTSPTEGPGSVHSDTSN
          TPSSVTSPTEGPGS.HSDTS.
Retrocopy TPSSVTSPTEGPGSAHSDTSH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_981 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000548	3 retrocopies	retro_mluc_1220, retro_mluc_1790, retro_mluc_981 ,
Otolemur garnettii	ENSOGAG00000016303	1 retrocopy	retro_ogar_2252,
Tursiops truncatus	ENSTTRG00000013787	1 retrocopy	retro_ttru_1118,