RetrogeneDB ID: retro_mluc_990

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429786:10458062..10459081(-)
• Located in intron of: ENSMLUG00000000226

Retrocopy information

• Ensembl ID: ENSMLUG00000026599
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016664
• Aliases: None
• Description: None

Sequence

>retro_mluc_990
ATGGAGAAAGAGCTTCGGAGCACCATTCTTTTCAATGCATACAAAAAGGAAGTATTTATCACCAACAATGGCTATAAATC
GATACAGAAGAGACTTCAGAGCAATTGGAAGATTCAGAGCTTAAAAGATGAAATCACATCTGAGAATATAATTGGTGTGA
AACTGTGGATTACAGCTGGGCCAAGGGAAAAATTTACTGCAGCTGAGTTTGAGGTCCTGATGAAATACATTGACGGCATT
GGAGATATCCTTGCAATGCTAGGAGGGGGTGGGGAATCCAGATTTGACACCAATATTAACTTTCTCCTGGGAGAATATGG
AATCATGGTTAATAATGATGCTGTGGTTAGAAATGGATATTATAAGTATTTCCATCCTAAAAAAACTCTAGTTTCCAATG
GAGTCTTGAATAGGGAGATCAGCCGAGCTGCAGGGAAAGCTGTGCCTGGAATCATTGATGAGGAGAGCAGTGTAAACAAT
GCCTAGGTTCTCACCTTTGTATATCCTTTTGGTGCCACACTGAGTGTCATGAAACCAGCAGTTGCTGTTCTGTCCACGGG
TTCTGTCTGTTTTCCACTGAACAGACCCATTCTGGCTTTCTATCACTCCAAGAATCAAGGTGGGAAGCTGGCAGTGCTTG
GCTCATGTCACATGTTTAGTGACCAATATTTGGATAAAGAAGAAAATAGCAAAATCATGGATGTTGTTTTCCAATGGCTT
ACAACAGAAGACATTCATCTAAACCAGATTGATGCTGAGGATCCAGAGATTTCTGACTACATGATGCTGCCCGACACAGC
CACCCTGTCAGAGATGCTTTGAGTTTGTCTCCAAGAGGGTGATGAGAACCCACGGGACTTCACCACCCTCTTTGACCTGT
CCATTTACCAGCTGGATGTCACATCCCTCTCCAAGGTCATCAAGGCTATGAACAGCTCAATGTGAAACATGAACCTCTCC
AGCCCATCCAACCTCAGTTTGAGACACCGCTGCCGGTCAGCCAGCGGTTTTCCCTCCCA

Alignment

ORF - retro_mluc_990 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.08 %
• Parental protein coverage: 77.8 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MEKELRSTILFNAYKKELFTTNNGYKSMQKRLRSNWKIQSLKDEITSEKLIGVKLWITAGPREKFTAAEF
          MEKELRSTILFNAYKKE.F.TNNGYKS.QKRL.SNWKIQSLKDEITSE..IGVKLWITAGPREKFTAAEF
Retrocopy MEKELRSTILFNAYKKEVFITNNGYKSIQKRLQSNWKIQSLKDEITSENIIGVKLWITAGPREKFTAAEF

Parental  EVLKKYLDGGGDILVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVYYKYFHPKEALVSNGVLNREI
          EVL.KY.DG.GDIL.MLG.GGESRFDTNINFLL.EYGIMVNNDAVVRN.YYKYFHPK..LVSNGVLNREI
Retrocopy EVLMKYIDGIGDILAMLGGGGESRFDTNINFLLGEYGIMVNNDAVVRNGYYKYFHPKKTLVSNGVLNREI

Parental  SRAAGKAVPGIIDEESSGNNAQALTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKL
          SRAAGKAVPGIIDEESS.NNA..LTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKL
Retrocopy SRAAGKAVPGIIDEESSVNNA*VLTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKL

Parental  AVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTEDIHLNQIDAEDPEISDYMMLPDTATLSEMLRVCLQEG
          AVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTEDIHLNQIDAEDPEISDYMMLPDTATLSEML.VCLQEG
Retrocopy AVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTEDIHLNQIDAEDPEISDYMMLPDTATLSEML*VCLQEG

Parental  DENPRDFTTLFDLSIYQLDVTSLSKVIKA-YEQLNVKHEPLQLIQPQFETPLPALQPAFIP
          DENPRDFTTLFDLSIYQLDVTSLSKVIKA.YEQLNVKHEPLQ.IQPQFETPLP..Q....P
Retrocopy DENPRDFTTLFDLSIYQLDVTSLSKVIKA<YEQLNVKHEPLQPIQPQFETPLPVSQRFSLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_990 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000027175	1 retrocopy	retro_cpor_301,
Microcebus murinus	ENSMICG00000015182	1 retrocopy	retro_mmur_400,
Myotis lucifugus	ENSMLUG00000016664	1 retrocopy	retro_mluc_990 ,
Otolemur garnettii	ENSOGAG00000007699	1 retrocopy	retro_ogar_2343,
Takifugu rubripes	ENSTRUG00000014953	1 retrocopy	retro_trub_46,