RetrogeneDB ID: | retro_mmul_1091 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 14:7992291..7992633(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FLJ44606 | ||
| Ensembl ID: | ENSMMUG00000009523 | ||
| Aliases: | None | ||
| Description: | glutaredoxin-like protein YDR286C homolog [Source:RefSeq peptide;Acc:NP_001244726] |
Retrocopy-Parental alignment summary:
>retro_mmul_1091
ATGCTCTGGTTTCAAGGAAATAGCATGCAACTTGCCAAATCCTCCCTTGGAGTCTTCTTGGTAAACTGCTCTGCCTCTGA
GACAACTCTGCCTGTGCTGACCTTATTCACAAAGGACCCACACCCCGTTTGTGGTGAAGCCAAGGAAGTACTCAAGCCTT
ATAAAAACAGGTTTATTTTACAGGAAGTGAATGTCACACTTCCAGAAAACTCTGCCTGGTATGAAAGATATAAATTTGAC
ATTCCTGTCTTTCACTTGAATGGCCAGTTTCTGATGATGCATCGATAAAACACCTCAAAACTTGAAAAACAGCTCCTGAA
ACTTGAGCAGCAAAGTACCGGA
ORF - retro_mmul_1091 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 87.72 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MLWLQGNSMPLARSAFGLFLRNCSASKTTLPVLTLFTKDPCPLCDEAKEVLKPYKNRFILQEVNITLPEN |
| MLW.QGNSM.LA.S..G.FL.NCSAS.TTLPVLTLFTKDP.P.C.EAKEVLKPYKNRFILQEVN.TLPEN | |
| Retrocopy | MLWFQGNSMQLAKSSLGVFLVNCSASETTLPVLTLFTKDPHPVCGEAKEVLKPYKNRFILQEVNVTLPEN |
| Parental | SVWYERYKFDIPVFHLNGQFLMMHRVNTSKLEKQLLKLEQQSTG |
| S.WYERYKFDIPVFHLNGQFLMMHR.NTSKLEKQLLKLEQQSTG | |
| Retrocopy | SAWYERYKFDIPVFHLNGQFLMMHR*NTSKLEKQLLKLEQQSTG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 5 .15 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .47 RPM |
| SRP007412_cerebellum | 0 .13 RPM | 4 .13 RPM |
| SRP007412_heart | 0 .00 RPM | 3 .47 RPM |
| SRP007412_kidney | 0 .00 RPM | 8 .45 RPM |
| SRP007412_liver | 0 .00 RPM | 5 .78 RPM |
| SRP007412_testis | 0 .26 RPM | 17 .23 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1091 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1091 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1091 has 3 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_788 |
| Gorilla gorilla | retro_ggor_653 |
| Pongo abelii | retro_pabe_746 |
Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000164241 | 1 retrocopy | |
| Gorilla gorilla | ENSGGOG00000006111 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000009523 | 1 retrocopy |
retro_mmul_1091 ,
|
| Pongo abelii | ENSPPYG00000015732 | 1 retrocopy |