>retro_mmul_1380
GAGACCTTTGTGTCATCCACCCGTTTTGTCAAGTATGAAAAATGTCATCATTTTTTTGTTGTGCTATCTGAAGCAGACTC
AAAGAAAAGCATAATTAAAGAAACTGCATCAGCAGCAGAAGCTGTAAAATTGGCATTCCAACAGAAACCACCACCTCCCC
CTGAGAAGATTTATAACTACCTCGACAAGTATGTTGTTGGCCAGTCATTTGCTAAGAAGGTGCTTTCAGTTGCTGTGTAC
AATCATTATAAGAGAATACATAATAATATCCCAGCTAATCTGAGACAGCAAGCAGAGGTTGAGAAGCAGACATCATTAAC
ACCAAGAGAGTTAGAAGTAAGAAGACGGGAGGATGAGTACAGATTTACAAAATTACTTCAGATTGCTGGAATGAGCCCAC
ATGGTAATGCTTTAGGAGCATCAATGCAGCAACAGGTAAATCAACAGATACCTCAGGAAAAATGAGGAGGTGAAGTATTG
GATTCTTCTCATGATGACAGAAAACTTGAAAAAAGTAATATTTTGCTACTTGGACCAACTGGGTCAGGTAAAACTCTGCT
GGCACAAACCCTAGCTGAATGCCTTGATGTCCGTTTTGCTGTCTGTGACTGTACAACTATGACTCAGGCTGGATACGTAG
GCGAGGATATTGAATCTGTGATTGCCAAACTACTCCAAGATGCCAATTACAGTGTGGAAAAAGCACAACAAGGAATTGAT
GAAGTCGATAAGATTGGCAGTGTGCCAGGCGTTCATCAGTTACGAAATGTAGGTGAAGAAGGCGTTCAGCAAGGCTTATT
AAAACTACTAGAAGGCACAATAGTCAATGTTCCAGAAAAGAATTCCCGAAAGCTCCATGGAGAAACAGTACAAGTTGATA
CAACAAACATCCTGTTTGTTGCATCTGGTGCTTTCAGTGGTTTAGACAGAATCATCAGCAGGAGGAAAAATGAAAAGTAT
CTTGGATTTGGAACACCATCTAATCTGGGAAAGGGCAGAAGGGCTACAGCTGCTGCAGACCTTGCTAATAAAGTGGGGAA
TCAAATACGAAGACATTGAAGAAAAAGATCGGTTATTGCGTCATGTGGAAGCCAGAGGTCTGATTGAGTTTGGCATGATT
CCTGAGTTTGTGGGACAGTTGCCTGTGGTGGTTCCATTGCATAGCCTAGATGAGAAAACACTTGTACAAGTACTAACTGA
GCCACGAAATGCTGTTATTTCTCAGTACCAGGCCTTATTCAGCATGGATAAGTGTGAACTGAATGTTACTGAGGATGCTT
TGAAAGCTATAGCCAGATTGGCACTAGAATGAAAAACAGGTGCACAAGGCCTTCAGTCCATAATGGAAAAACTGTTACTA
GAACCAATGTTTGAAGTCCCTAATTCTGATATCGTACGTGTGGAGGTTGACAAAGAAGTAGTAGAAGGAAAAAAGGAACC
AGGATACATCCGGGCTCCAACGAAAGAATACTCTGAAGAGGAGTATGACTCTGGAGTTGAAGAAGAAGGCTGGCCCCGCC
AAGCAGATGCTGCAAATAGC
ORF - retro_mmul_1380 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.12 % |
Parental protein coverage: |
81.83 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | ETFVSSTRFVKCEKCHHFFVVLSEADSKKSIIKEPESAAEAVKLAFQQKPPPPPKKIYNYLDKYVVGQSF |
| ETFVSSTRFVK.EKCHHFFVVLSEADSKKSIIKE..SAAEAVKLAFQQKPPPPP.KIYNYLDKYVVGQSF |
Retrocopy | ETFVSSTRFVKYEKCHHFFVVLSEADSKKSIIKETASAAEAVKLAFQQKPPPPPEKIYNYLDKYVVGQSF |
|
Parental | AKKVLSVAVYNHYKRIYNNIPANLRQQAEVEKQTSLTPRELEIRRREDEYRFTKLLQIAGISPHGNALGA |
| AKKVLSVAVYNHYKRI.NNIPANLRQQAEVEKQTSLTPRELE.RRREDEYRFTKLLQIAG.SPHGNALGA |
Retrocopy | AKKVLSVAVYNHYKRIHNNIPANLRQQAEVEKQTSLTPRELEVRRREDEYRFTKLLQIAGMSPHGNALGA |
|
Parental | SMQQQVNQQIPQEKRGGEVLDSSHDDIKLEKSNILLLGPTGSGKTLLAQTLAKCLDVPFAICDCTTLTQA |
| SMQQQVNQQIPQEK.GGEVLDSSHDD.KLEKSNILLLGPTGSGKTLLAQTLA.CLDV.FA.CDCTT.TQA |
Retrocopy | SMQQQVNQQIPQEK*GGEVLDSSHDDRKLEKSNILLLGPTGSGKTLLAQTLAECLDVRFAVCDCTTMTQA |
|
Parental | GYVGEDIESVIAKLLQDANYNVEKAQQGIVFLDEVDKIGSVPGIHQLRDVGGEGVQQGLLKLLEGTIVNV |
| GYVGEDIESVIAKLLQDANY.VEKAQQGI...DEVDKIGSVPG.HQLR.VG.EGVQQGLLKLLEGTIVNV |
Retrocopy | GYVGEDIESVIAKLLQDANYSVEKAQQGI---DEVDKIGSVPGVHQLRNVGEEGVQQGLLKLLEGTIVNV |
|
Parental | PEKNSRKLRGETVQVDTTNILFVASGAFNGLDRIISRRKNEKYLGFGTPSNLGKGRRAAAAADLANR-SG |
| PEKNSRKL.GETVQVDTTNILFVASGAF.GLDRIISRRKNEKYLGFGTPSNLGKGRRA.AAADLAN..SG |
Retrocopy | PEKNSRKLHGETVQVDTTNILFVASGAFSGLDRIISRRKNEKYLGFGTPSNLGKGRRATAAADLANK<SG |
|
Parental | ESNTHQDIEEK-DRLLRHVEARDLIEFGMIPEFVGRLPVVVPLHSLDEKTLVQILTEPRNAVIPQYQALF |
| ESNT......K.DRLLRHVEAR.LIEFGMIPEFVG.LPVVVPLHSLDEKTLVQ.LTEPRNAVI.QYQALF |
Retrocopy | ESNT-KTLKKK<DRLLRHVEARGLIEFGMIPEFVGQLPVVVPLHSLDEKTLVQVLTEPRNAVISQYQALF |
|
Parental | SMDKCELNVTEDALKAIARLALERKTGARGLRSIMEKLLLEPMFEVPNSDIVCVEVDKEVVEGKKEPGYI |
| SMDKCELNVTEDALKAIARLALE.KTGA.GL.SIMEKLLLEPMFEVPNSDIV.VEVDKEVVEGKKEPGYI |
Retrocopy | SMDKCELNVTEDALKAIARLALE*KTGAQGLQSIMEKLLLEPMFEVPNSDIVRVEVDKEVVEGKKEPGYI |
|
Parental | RAPTKESSEEEYDSGVEEEGWPRQADAANS |
| RAPTKE.SEEEYDSGVEEEGWPRQADAANS |
Retrocopy | RAPTKEYSEEEYDSGVEEEGWPRQADAANS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
27 .68 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
18 .40 RPM |
SRP007412_cerebellum |
0 .06 RPM |
25 .89 RPM |
SRP007412_heart |
0 .12 RPM |
24 .50 RPM |
SRP007412_kidney |
0 .00 RPM |
33 .45 RPM |
SRP007412_liver |
0 .24 RPM |
30 .99 RPM |
SRP007412_testis |
0 .53 RPM |
142 .44 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1380 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1380 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1380 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.