RetrogeneDB ID: | retro_mmul_152 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:37024645..37025836(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000022781 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DCAF4 | ||
Ensembl ID: | ENSMMUG00000003625 | ||
Aliases: | DCAF4, WDR21A | ||
Description: | DDB1- and CUL4-associated factor 4 [Source:RefSeq peptide;Acc:NP_001245043] |
Percent Identity: | 78.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESKRLRLLEEEDKQKKIARMGFNASSMLRKSQLGFLNVTSYCHLAHELRLSCMERKKVQIRSLDPSALA |
ME..RLRLLEEE.KQKK.ARMGFNASSMLRKSQLGFLNVTSY..LA.ELR.SCMERKKVQIRSLDPS.LA | |
Retrocopy | MEAERLRLLEEEAKQKKVARMGFNASSMLRKSQLGFLNVTSYSRLANELRVSCMERKKVQIRSLDPSSLA |
Parental | SDRFNLILADTNSDRLFTVNDVKVGGSKYGIINLQSLKTPTLKVFMHENLYFTNRKVNSVCWASLNHLDS |
.DRFN.ILA.TNSD.LF.VN.V.V.GSKYGII.L..LK.P...V....NLY..NRKV.S.CWASLN.LDS | |
Retrocopy | TDRFNFILASTNSDQLFVVNQVEVEGSKYGIISLRTLKIPSFHVYVLRNLYVPNRKVKSLCWASLNQLDS |
Parental | HILLCLMGLAETPGCATLLPASLFVNSHPGIDRPGMLCSFRIPGAWSCAWSLNIQANNCFSTGLSRRVLL |
HILLC..G....P.CA.LLPAS.F...H.....PGMLCSF.IP.AWSCAWSLN..A..CFS.GLS..VLL | |
Retrocopy | HILLCFEGITDAPSCAVLLPASRFLSVHTRVNQPGMLCSFQIPEAWSCAWSLNTRAYHCFSAGLSQQVLL |
Parental | TNVVTGHRQSFGTNSDVLAQQFALMVPLLFNGCRSGEIFAIDLRCGNQGKGWKATRLFHDSAVTSVRILQ |
TNV.TGH.QSFG..SDVLAQQFA...PLLFNGCRSGEIFAIDLRC.N.GKGW.ATRLFHDSAVTSV.ILQ | |
Retrocopy | TNVATGHQQSFGASSDVLAQQFASTAPLLFNGCRSGEIFAIDLRCRNRGKGWRATRLFHDSAVTSVQILQ |
Parental | DEQYLMASDMAGKIKLWDLRTTKCIRQYEGHVNEYAYLPLHVHEEEGILVAVGQDCYTRIWSLHDAHLLR |
.EQ.LMASDM.GKIKLWDLR.TKC.RQYEGHVNE.AYLPLHVHEEEGI.VAVGQDCYTRIWSLHDAHLLR | |
Retrocopy | EEQCLMASDMTGKIKLWDLRATKCLRQYEGHVNESAYLPLHVHEEEGIVVAVGQDCYTRIWSLHDAHLLR |
Parental | TIPSPYPASKADIPSVAFSSRLGGSRG-APGLLMAVGQDLYCYSYS |
TIPSPY.AS..DIPSVAF.SRLGG.RG.APGLLMAV.QDLYC...S | |
Retrocopy | TIPSPYSASEDDIPSVAFASRLGGIRGAAPGLLMAVRQDLYCFPFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .90 RPM | 5 .38 RPM |
SRP007412_brain_prefrontal_cortex | 0 .87 RPM | 4 .28 RPM |
SRP007412_cerebellum | 0 .77 RPM | 5 .23 RPM |
SRP007412_heart | 0 .12 RPM | 3 .53 RPM |
SRP007412_kidney | 1 .06 RPM | 11 .15 RPM |
SRP007412_liver | 0 .16 RPM | 5 .23 RPM |
SRP007412_testis | 8 .86 RPM | 9 .27 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_101 |
Pan troglodytes | retro_ptro_46 |
Gorilla gorilla | retro_ggor_2026 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000013878 | 1 retrocopy | |
Homo sapiens | ENSG00000119599 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003815 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003625 | 2 retrocopies |
retro_mmul_152 , retro_mmul_264,
|
Nomascus leucogenys | ENSNLEG00000002449 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000006507 | 2 retrocopies |