RetrogeneDB ID: | retro_mmul_1614 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 3:76451356..76452490(+) | ||
| Located in intron of: | ENSMMUG00000013690 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | GNL2 | ||
| Ensembl ID: | ENSMMUG00000008419 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_1614
ATCTGGAAATACATTACCTTGATATATTGGTTATGCTTGATTGACTGTCCAGGTTTGGTTTACTCTTCCAAGGACTTGAA
GACAGACATTGTACTAAAAGGAGCTGTTTAAGTAGGAAAAATTAAGGCCCCTGAAGACTGTATTGATGTATTTGAACAAG
TAAAGCAAGAATATGTCAACAAGACATAAAAGATTAATTATTGGGAGAATGCTGAGGACTTTATTGAGAAGCTAACTTTC
TGGACTGGAAAGTTACTGAAGGGTGGAGTAACTTACTTACTTACTGACTGTGGGTGGATAGTCCTCAATGACTGGCTGAG
GAGGCTGGATTCCCTTCTTTGTCAAGCTGCCTAATAGAGAGCCCCTTGTGGGCCCCCAGCTTTCACCTTCCTAGTCTGTG
AAAGTTGCCACAGAAGCAACCCAGAACAATCCAGAAGAGGAAGTGACAGAAGGAATACCAAAACTGTAGGTGAAGTGACA
GAATCTGTGATTGAAAAGAAAAAGAAGAGAATAGTCATTGGGATGCTAACTCAGAGATGCAACAGATTCTTGTGCATGGG
TTCAGCAACTTTGGCAAACCCAATGTGGTGCCTCAGTCTTCTGGGGATGACCCAGTTCCTGTGGATATGTCATATCTGGA
GAAAGAGCTTGAGAGCTTTTCTACTGAAGAAGAGGAGCAGAAGCAGGAGATGATGAAGAAGAGTTTTACTAGGAATCTGA
GGAAGGACATATGGAAAAATCACACCAAAGCCATTATGAAAGCTCTAGATGAGAATATTGCTAAATATCAGAAGTTTTTA
GACAAAGTTAAAGCCAAAAAGTTTTCAGGAGTCAGAATATCCAAGGGACTAAGTGAAAAACATGAAGAGCAGAGAAAAAT
ATCTGAAGAAGATGTAGATGATGCACAGTATCTACCAAAAAAGGAAATAAGCAGAAGTCACAGAGGGAAGAGGAACATTC
AAGCAAAACTTGCAGGATGCTTACATCTAAGGAATGGAAGTGAGCAGTACAGCAGCAACAATCCGAAAACATTTGTGTGC
ACTACTGTGAAACACACAATGTGAAAAATACAAACGAGAAACAAAAGACGACCAGTGACTCAGAGGGACTGAAGTACAAA
CACAAAAATTCAGA
ORF - retro_mmul_1614 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 55.58 % |
| Parental protein coverage: | 52.19 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 7 |
Retrocopy - Parental Gene Alignment:
| Parental | VWQYITLMRRIFLIDCPGVVYPSEDSETDIVLKGVVQVEKIKSPEDHIGAVLERAKPEYISKTYKIDSWE |
| .W.YITL.....LIDCPG.VY.S.D..TDIVLKG.V.V.KIK.PED.I..V.E..K.EY..KT.KI..WE | |
| Retrocopy | IWKYITLIYWLCLIDCPGLVYSSKDLKTDIVLKGAV*VGKIKAPEDCID-VFEQVKQEYVNKT*KINYWE |
| Parental | NAEDFLEKLAFRTGKLLKGGEPDLQT-VGKMVLNDWQR-GRIPFFV----KPPNAEPPVAPQLPPSPSLE |
| NAEDF.EKL.F.TGKLLKGG...L.T..G..VLNDW.R.G.IPFFV......P...P...P........E | |
| Retrocopy | NAEDFIEKLTFWTGKLLKGGVTYLLTDCGWIVLNDWLR>GWIPFFVKLPNREPLVGPQLSPS*SVKVATE |
| Parental | VV-PEAARKNPGKEVTETAGEGSESVIKE-ETEENSHCDTNTEMQQILTRVRQNFGKINVVPQFSGDDLV |
| ...PE..R.......T.T.GE..ESVI...E.EENSH.D.N.EMQQIL.....NFGK.NVVPQ.SGDD.V | |
| Retrocopy | AT<PEQSRRGSDRRNTKTVGEVTESVIEK<EKEENSHWDANSEMQQILVHGFSNFGKPNVVPQSSGDDPV |
| Parental | PVEVSDLEEELESFSDEEEEEQEQQR-DDVEESSSEPEEEHVG-NDTKAVIKALDEKIAKYQKFLDKAKA |
| PV..S.LE.ELESFS.EEE.....Q..DD.EE...E.EE.H...N.TKA..KALDE.IAKYQKFLDK.KA | |
| Retrocopy | PVDMSYLEKELESFSTEEE--EQKQE<DDEEEFY*ESEEGHME>NHTKAIMKALDENIAKYQKFLDKVKA |
| Parental | KKFSAVRISKGLSEKIFAKPEEQRKTLEEHVDDTAPSKKGKKRKAQR-EEEQEHSNKAPRALTSKERRRA |
| KKFS.VRISKGLSEK.....E......E..VDD.....K.......R..EE..HS.K..R.LTSKE...A | |
| Retrocopy | KKFSGVRISKGLSEK---HEEQRKISEED-VDDAQYLPKKEISRSHR<REEE-HSSKTCRMLTSKEWK*A |
| Parental | VRQQRPKKVGVRYYETHNVKNRNRNKKKTNDSEGQKHKRK-KFR |
| V.QQ......V.Y.ETHNVKN.N...K.T.DSEG.K.K.K.KFR | |
| Retrocopy | VQQQQSENICVHYCETHNVKNTNEKQKTTSDSEGLKYKHK<KFR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .11 RPM | 26 .78 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 19 .36 RPM |
| SRP007412_cerebellum | 0 .32 RPM | 25 .77 RPM |
| SRP007412_heart | 0 .00 RPM | 29 .80 RPM |
| SRP007412_kidney | 0 .12 RPM | 28 .64 RPM |
| SRP007412_liver | 0 .04 RPM | 10 .45 RPM |
| SRP007412_testis | 0 .41 RPM | 73 .24 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1614 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1614 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1614 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000008419 | 1 retrocopy |
retro_mmul_1614 ,
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