RetrogeneDB ID: retro_mmul_1887

Retrocopy location

• Organism: Rhesus macaque (Macaca mulatta)
• Coordinates: 5:61296895..61297462(+)
• Located in intron of: ENSMMUG00000020312

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SYT14
• Ensembl ID: ENSMMUG00000016349
• Aliases: None
• Description: None

Sequence

>retro_mmul_1887
ATGTTGGAGGGCTTCCAGATCTTGGTTCAGAATAGAGTACAAGGAACAATTCACAAGATAAAATTTGGCCGTGACTCCCA
AATGAGAATGTCAGAAATGTTGTGTAGTGAAAGTACATCCTCATGTCAGTCTCTTGAACACGGCTCAGTTCCAGAAATTC
TCATTAGCCTGCTTTGTAATGCCACAACTGGAAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTCAAAAATTTGGCA
GCAAATAGACCACCCAATACATATATTAAGTTAACTCTGCTGAAATCCATGGATCAAGAGATGTCCAAATGCAAGATACC
CATCTGCAGAGGGCAGCCAAATCCAGTGTACAAGGAAACTTTTGTTTTTCAAGGGGCCCTATTTCAGCTTTCTGATGTGA
CACTCATACTGTCTGTATATAACAAACGCAGCATGAGAAGTAAAGAGATGATAGGCTGGATTTCTTTAGGTCTCAACAGC
TCTGGAGAAGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACAGCAAGTACATAGATGGCATGCGTTGCT
AGAGTCA

Alignment

ORF - retro_mmul_1887 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.95 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLAGFQILVQNTVQGRIHKIKFGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEV
          ML.GFQILVQN.VQG.IHKIKFG.DSQM..SEM.CSESTSSCQSLEHGSVPEILI.LL.NATTGRLSAEV
Retrocopy MLEGFQILVQNRVQGTIHKIKFGRDSQMRMSEMLCSESTSSCQSLEHGSVPEILISLLCNATTGRLSAEV

Parental  IKGSHFKNLAANRPPNTYVKLTLLNSMGQEMSKCKTSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVY
          IKGSHFKNLAANRPPNTY.KLTLL.SM.QEMSKCK..I.RGQPNPVYKETFVFQ.ALFQLSDVTLILSVY
Retrocopy IKGSHFKNLAANRPPNTYIKLTLLKSMDQEMSKCKIPICRGQPNPVYKETFVFQGALFQLSDVTLILSVY

Parental  NKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVCRWHALLES
          NKRSM..KEMIGWISLGLNSSGEEELNHWTEMKESKGQQV.RWHALLES
Retrocopy NKRSMRSKEMIGWISLGLNSSGEEELNHWTEMKESKGQQVHRWHALLES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	4.93 RPM
SRP007412_brain_prefrontal_cortex	0.00 RPM	6.11 RPM
SRP007412_cerebellum	0.00 RPM	6.33 RPM
SRP007412_heart	0.00 RPM	0.65 RPM
SRP007412_kidney	0.00 RPM	0.70 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	2.64 RPM

ChIP-Seq

Macaca mulatta was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmul_1887 retrocopy.

TSS

Macaca mulatta was not studied using FANTOM5 data.

Lab

retro_mmul_1887 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmul_1887 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macaca mulatta	ENSMMUG00000016349	1 retrocopy	retro_mmul_1887 ,