RetrogeneDB ID: | retro_mmul_1910 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 5:135976985..135977494(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSMMUG00000010090 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_1910
GGCTGCGTGCTGGCGCTGCAGGGCGGGATGCTGTGTCCCCGAGAGAGGCCGTCGCAGGAGCGCAAGAAGCTGGACGGCCT
CTGGAGGAGCTTCTGCGCCGACTTCTTCGACAACCGGTGCCGTGGCTTCTAGGAGCAGTGGTATCCGCGTCTGCTGCGAG
AGTCGGACCCCATCCTGGACATGCCGGTTCCCTCCAGCTTCAACGACATTGGCCAGGACTGGCGGCTGCGGCATTTTCTA
GGCCAGACGTGGTACGAACGGGAGGTGACCCTGCCAGAGCAATGGACCCAGGACCTGCACACAAGAGTGGTGCTGAGGAT
TGGCAGTGCCCACTCCTATGCCATTGCGTGGGTGAATGGGGTCGACGCGCTAGAGCATGAGGGGTCTACCTCTCCTTCGA
CACCGACATCAGCAGCTTGTTCCAGGTGGGGCCGCCGCCCTCCCACCTCCGCATCACTATCACCATAAACAATATGCTCA
CCCCCTCCACCCTGCCACCAGGGACCATC
GGCTGCGTGCTGGCGCTGCAGGGCGGGATGCTGTGTCCCCGAGAGAGGCCGTCGCAGGAGCGCAAGAAGCTGGACGGCCT
CTGGAGGAGCTTCTGCGCCGACTTCTTCGACAACCGGTGCCGTGGCTTCTAGGAGCAGTGGTATCCGCGTCTGCTGCGAG
AGTCGGACCCCATCCTGGACATGCCGGTTCCCTCCAGCTTCAACGACATTGGCCAGGACTGGCGGCTGCGGCATTTTCTA
GGCCAGACGTGGTACGAACGGGAGGTGACCCTGCCAGAGCAATGGACCCAGGACCTGCACACAAGAGTGGTGCTGAGGAT
TGGCAGTGCCCACTCCTATGCCATTGCGTGGGTGAATGGGGTCGACGCGCTAGAGCATGAGGGGTCTACCTCTCCTTCGA
CACCGACATCAGCAGCTTGTTCCAGGTGGGGCCGCCGCCCTCCCACCTCCGCATCACTATCACCATAAACAATATGCTCA
CCCCCTCCACCCTGCCACCAGGGACCATC
ORF - retro_mmul_1910 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.4 % |
| Parental protein coverage: | 100. % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | GCALALLGRMLYLGESPWRERKELDSLW-SLPADFSDNRPRGFQEQRYRRLLLESGPTLYIPVPSIFNDI |
| GC.LAL.G.ML...E.P..ERK.LD.LW.S..ADF.DNR.RGF.EQ.Y.RLL.ES.P.L..PVPS.FNDI | |
| Retrocopy | GCVLALQGGMLCPRERPSQERKKLDGLWRSFCADFFDNRCRGF*EQWYPRLLRESDPILDMPVPSSFNDI |
| Parental | SQDWWLWRFVSWVWYEREVTQLERWIQDLCTRVVLRIGSAHFYAIVWVNGFDRLEHEGYL-PFEADSSSL |
| .QDW.L..F....WYEREVT..E.W.QDL.TRVVLRIGSAH.YAI.WVNG.D.LEHEG...P....S... | |
| Retrocopy | GQDWRLRHFLGQTWYEREVTLPEQWTQDLHTRVVLRIGSAHSYAIAWVNGVDALEHEGSTSPSTPTSAAC |
| Parental | FQVGPLP-SRLCVTVAINNMLAPPALPPGTI |
| ...G..P.S.L..T..INNML.P..LPPGTI | |
| Retrocopy | SRWGRRP<SHLRITITINNMLTPSTLPPGTI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .79 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .26 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .41 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .23 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .99 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .41 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1910 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1910 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1910 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000010090 | 1 retrocopy |
retro_mmul_1910 ,
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