RetrogeneDB ID: | retro_mmul_2170 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 7:102195817..102196278(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TMEM92 | ||
| Ensembl ID: | ENSMMUG00000001469 | ||
| Aliases: | None | ||
| Description: | transmembrane protein 92 [Source:HGNC Symbol;Acc:26579] |
Retrocopy-Parental alignment summary:
>retro_mmul_2170
GTCCCCGGCCTCATGACCACCTTGCTGCTCATCCTGGTCGCTGGCCCCCAAAAGGTTGCAGCCAAATGTGGTCTCTCCTT
TGCCTGCCCCAAAGGATTCAAATGCTGTGGCGACAGCTGCTGCTAGGAAAATGTGTTCTTCCCTGGCCCCTTGAGGATCT
TCGTCATCATGTTCCTGATCATCCTGCCCCTCTTGTGCATCTGTGACTGGCTAAGCACTACTGTCCCAGCTGCAGAGACC
CAGACCCAGATGCCCTGATGGATTGCCGAGGACCCCAGGAACTGCCCTCCATCATCCCCCTAGAGAGGGTCAGAGCATCC
CTCTCTGCGCCCCCACCCTCCTACAGTGAGGTGATTCTGAAGCCTACCTGGGGCCCAACTTCCACAGAGCCACCCCCTCA
CTACGGCTTCAGGCCTGAAGAATATACCGGGGATTAGAGGGCCATTGACAACCCGGCCTTC
ORF - retro_mmul_2170 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 74.84 % |
| Parental protein coverage: | 96.86 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VTGLAPTLLLSLLASPQKVAAKCGFIFNCPKGFKCCGDSCCQENELFPGPVRIFVIIFLVILSLFCICG- |
| V.GL..TLLL.L.A.PQKVAAKCG..F.CPKGFKCCGDSCC.EN..FPGP.RIFVI.FL.IL.L.CIC.. | |
| Retrocopy | VPGLMTTLLLILVAGPQKVAAKCGLSFACPKGFKCCGDSCC*ENVFFPGPLRIFVIMFLIILPLLCICD< |
| Parental | LAKCFCRNCREPEPDAPMDCPGPLELPSIIPPERVRVSPSAPPPPYSEVILKPSLGPTPTEPPPPYSFRP |
| LAK..C..CR.P.PDA.MDC.GP.ELPSIIP.ERVR.S.SAPPP.YSEVILKP..GPT.TEPPP.Y.FRP | |
| Retrocopy | LAKHYCPSCRDPDPDALMDCRGPQELPSIIPLERVRASLSAPPPSYSEVILKPTWGPTSTEPPPHYGFRP |
| Parental | EEYTGDRRGIDNPAF |
| EEYTGD.R.IDNPAF | |
| Retrocopy | EEYTGD*RAIDNPAF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .06 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .12 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2170 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2170 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2170 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 6 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000167105 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000001469 | 1 retrocopy |
retro_mmul_2170 ,
|
| Nomascus leucogenys | ENSNLEG00000009007 | 1 retrocopy | |
| Rattus norvegicus | ENSRNOG00000042868 | 3 retrocopies |