RetrogeneDB ID: | retro_mmul_2205 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 7:6118415..6118944(-) | ||
| Located in intron of: | ENSMMUG00000023555 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DUSP3 | ||
| Ensembl ID: | ENSMMUG00000002351 | ||
| Aliases: | None | ||
| Description: | dual specificity protein phosphatase 3 [Source:RefSeq peptide;Acc:NP_001253477] |
Retrocopy-Parental alignment summary:
>retro_mmul_2205
TCCATGAAGCATCTCAATGACCCGCTCTCAGACAGCAGTGGCTGCTACAGCCTCCCAGGCCAGCCCTGCAATGAGGTCAC
CCTGAGGATTTACATGGGCAACACATCTGTGGCTCGGGAGATCCCCAAGCTTCAGAAACTGGGCATTATTCATGTCCTGA
ACACCACTGAGGGCAGGTCTTTCATGCACATAAACAATGCCAACTTCTCCAAGGACCATGGCATCACTTACCTGGGCATC
AAGGCCAAAGAAGTGCAGGAGTTCAACCTCAGCACCTACTTTGAAAGGGCTACAGACTTCACTAACCAGGCCTTGGCTCA
AAAGAATGGTCAGGTGCTCGTCCAGTGCTGGGAAGTTACAGCCATCTCCAGCTCTAGTTATGATGTACCTCATGATGTGT
CAGAAGTTGGACATCAAGTCCCTCCTGAGTATCATAAGGCAGAACTATGAGATCAGCCCCAGTGATGGGTTCCTGGCTCA
GCTTTGCCATTTCGATGACAAACTAGCCAAGGAGCGGAAGGTGAAACCC
ORF - retro_mmul_2205 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.78 % |
| Parental protein coverage: | 96.22 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | SVQDLNDLLSDGSGCYSLPSQPCNEVTPRIYVGNASVAQDIPKLQKLGITHVLNAAEGRSFMHVNTNANF |
| S...LND.LSD.SGCYSLP.QPCNEVT.RIY.GN.SVA..IPKLQKLGI.HVLN..EGRSFMH.N.NANF | |
| Retrocopy | SMKHLNDPLSDSSGCYSLPGQPCNEVTLRIYMGNTSVAREIPKLQKLGIIHVLNTTEGRSFMHIN-NANF |
| Parental | YKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCRE-GYSR-SPTLVIAYLMMRQKM |
| .KD.GITYLGIKA...QEFNLS.YFERA.DF..QALAQKNG.VLV.C.E..YS..SP.LV..YLMM.QK. | |
| Retrocopy | SKDHGITYLGIKAKEVQEFNLSTYFERATDFTNQALAQKNGQVLVQCWE<SYSH<SPALVMMYLMMCQKL |
| Parental | DVKSALSIVRQNREIGPNDGFLAQLCQLNDRLAKEGKLKP |
| D.KS.LSI.RQN.EI.P.DGFLAQLC...D.LAKE.K.KP | |
| Retrocopy | DIKSLLSIIRQNYEISPSDGFLAQLCHFDDKLAKERKVKP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .34 RPM | 73 .62 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 123 .28 RPM |
| SRP007412_cerebellum | 0 .06 RPM | 43 .65 RPM |
| SRP007412_heart | 0 .00 RPM | 77 .61 RPM |
| SRP007412_kidney | 0 .00 RPM | 53 .99 RPM |
| SRP007412_liver | 0 .00 RPM | 15 .00 RPM |
| SRP007412_testis | 0 .11 RPM | 26 .80 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2205 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2205 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2205 has 3 orthologous retrocopies within eutheria group .| Species | RetrogeneDB ID |
|---|---|
| Homo sapiens | retro_hsap_1541 |
| Gorilla gorilla | retro_ggor_1174 |
| Pongo abelii | retro_pabe_1277 |
Parental genes homology:
Parental genes homology involve 5 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Homo sapiens | ENSG00000108861 | 1 retrocopy | |
| Gorilla gorilla | ENSGGOG00000023681 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000002351 | 1 retrocopy |
retro_mmul_2205 ,
|
| Nomascus leucogenys | ENSNLEG00000005702 | 1 retrocopy | |
| Pongo abelii | ENSPPYG00000008353 | 1 retrocopy |