>retro_mmul_2510
TTTGAAGAACTCAGCAAACTAATGATCAAGGCTAAGGAAATGGTGGAGTTATCAAAATCAATTGCTAATAAAATTAAAGA
CAAACAAGGTGACATCACAGAAGATGAGACCATCAGGTTTAAATCCTACTTGCTGAGCATGGGAATAGCTAACCCAGTTA
CCAGAGAAACCTACGGCTCAGGCACACAGTACCACATGCAATTGGCCAAACAGCTGGCTGGAATATTGCAGGTGCCTTTA
GAGGAATGAGGGGGAATAATGTCACTCACGGAGGTGTACTGCTTAGTAAACCGAGCTCGAGGAATGGAATTACTCTCACC
AGAAGATTTAGTGAATGCGTGCAAGATGCTGGAAGCACTGAAATTACCTCTCAGGCTCCGTGTGTTTGACAGTGGCGTCA
TGGTAATTGAGCTTCAGTCTCACAAGGAAGAGGAAATGGTGGCCTAGGCCCTGGAGACAGTTTCAGAAAAGGGATCCCTA
ACATCGGAAGAGTTTGCTAAGCTTGTGGGAATGTCTGTCCTTCTAGCCAAAGAAAGGTTGCTGCTTGCAGAGAAGATGGG
CCGTCTTTGCCGTGATGACTCAGTGAAAGGCCTGCGTTTTTACCCAAGTTTATTTATGACACAGAGC
ORF - retro_mmul_2510 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.13 % |
Parental protein coverage: |
54.15 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAK |
| FE.LSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAK |
Retrocopy | FEELSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAK |
|
Parental | QLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQS |
| QLAGILQVPLEE.GGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQS |
Retrocopy | QLAGILQVPLEE*GGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQS |
|
Parental | HKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFMTQS |
| HKEEEMVA.ALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMG.LCRDDSV.GLRFYP.LFMTQS |
Retrocopy | HKEEEMVA*ALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGRLCRDDSVKGLRFYPSLFMTQS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .45 RPM |
46 .39 RPM |
SRP007412_brain_prefrontal_cortex |
0 .16 RPM |
33 .87 RPM |
SRP007412_cerebellum |
0 .52 RPM |
63 .61 RPM |
SRP007412_heart |
0 .12 RPM |
26 .26 RPM |
SRP007412_kidney |
0 .59 RPM |
46 .60 RPM |
SRP007412_liver |
0 .20 RPM |
20 .27 RPM |
SRP007412_testis |
0 .00 RPM |
10 .55 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2510 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2510 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2510 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.