RetrogeneDB ID: | retro_mmul_2602 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | X:81822510..81823470(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MMU.13063 | ||
| Ensembl ID: | ENSMMUG00000017312 | ||
| Aliases: | ZRANB2, ZNF265 | ||
| Description: | zinc finger Ran-binding domain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001244565] |
Retrocopy-Parental alignment summary:
>retro_mmul_2602
ATGTCGACCAAGAATTTCCGAGTCAGTGACAGGGACTGGATTTGCCCTGACAAAACATGTGGAAATGTAAACTTTGCTAG
AAGAACCAGCTGTAATCGATGTGGTCGGGAGAAAACAACTGAGGCCAAGATGATGAAAGTTGGGGGCACTGAAATAGGAA
AGACACTTGTAGAAAAGAGCCGAGGCCTATTTAGTGCTAATGACTGGCAATGTAAAACTTGCAGCAATGTGACTTAGGCC
AGAAGATCAGAGTGTAATATGCGTAATACTCCAAAGTATGCTAAATTAGAAGAAAGAACAGGATATGGTGGTGGTTTTAA
TGAAAGAGAAAATGTTGAATATATAGAAAGAGAAGAATCTGATGGTGAATATGATGAGTTTGGACATAAAAAGAAAAAAT
ACAGAGGGAAAGCAGTTGGTCCTGCATCTATATTAAAGGAAGTTGAAGATAAAGAATCAGAGGGAGAAGAAGAGGATGAG
GATGAAGATCTTTCTAAATACAAATTAGATGAGGATGAGGATGAAGATGATGCTGATCTCTCAAAATATAATCTTGATGC
CAGTGAAGAAGAAGATAGTAATAAAAAGAAATCTAATAGACGAAGTCGCTCAAAGTCTCGATCTTCACATTCACGATCTT
CATCACGCTCATCCTCCCCTTCAAGTTCAAGGTCTAGGTCCAGGTCCCGTTCAAGAAGTTCTTCCAGTTCACGGTCAAGA
TCTCGTTCCAGTTCCAGAGAACTTTCGAGATCTCGTGGGTCGAAATCAAGATCCAGCTCCAGGTCCCACAGGGGCTCTTC
TTCCCCACGAAAAAGATCTTATTCAAGTTCATCATCTTCTCCTGAGAGGAACAGAAAGAGAAGTCGTTCTAGATCTTCTT
CATCTGGTGATCGCAAAAAAAGATGAACAAGATCACGGTCACCCAAAAGCCAGGTGATTGGTGAAAACACTAAACAACCC
ORF - retro_mmul_2602 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.31 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQ |
| MSTKNFRVSD.DWICPDK.CGNVNFARRTSCNRCGREKTTEAKMMK.GGTEIGKTL.EKSRGLFSANDWQ | |
| Retrocopy | MSTKNFRVSDRDWICPDKTCGNVNFARRTSCNRCGREKTTEAKMMKVGGTEIGKTLVEKSRGLFSANDWQ |
| Parental | CKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVG |
| CKTCSNV..ARRSECNM.NTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFG.KKKKYRGKAVG | |
| Retrocopy | CKTCSNVT*ARRSECNMRNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGHKKKKYRGKAVG |
| Parental | PASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH |
| PASI...................LSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH | |
| Retrocopy | PASIXXXXXXXXXXXXXXXXXXXLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH |
| Parental | SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSS |
| SRSSSRSSSPSSSRSRSRSRSRSSSSS.SRSRSSSRE.SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSS | |
| Retrocopy | SRSSSRSSSPSSSRSRSRSRSRSSSSSRSRSRSSSRELSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSS |
| Parental | PERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQP |
| PERNRKRSRSRSSSSGDRKKR.TRSRSP.SQVIGENTKQP | |
| Retrocopy | PERNRKRSRSRSSSSGDRKKR*TRSRSPKSQVIGENTKQP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .34 RPM | 67 .23 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .40 RPM | 36 .81 RPM |
| SRP007412_cerebellum | 0 .90 RPM | 112 .23 RPM |
| SRP007412_heart | 0 .29 RPM | 25 .62 RPM |
| SRP007412_kidney | 0 .12 RPM | 25 .23 RPM |
| SRP007412_liver | 0 .04 RPM | 8 .27 RPM |
| SRP007412_testis | 0 .26 RPM | 41 .65 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2602 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2602 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2602 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 9 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000006356 | 2 retrocopies | |
| Macaca mulatta | ENSMMUG00000017312 | 2 retrocopies |
retro_mmul_2602 , retro_mmul_2618,
|
| Monodelphis domestica | ENSMODG00000000504 | 2 retrocopies | |
| Tupaia belangeri | ENSTBEG00000002316 | 3 retrocopies |