RetrogeneDB ID: | retro_mmul_284 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 1099553000118:27115..27610(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMMUG00000016234 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RNASEH2C | ||
| Ensembl ID: | ENSMMUG00000019837 | ||
| Aliases: | None | ||
| Description: | ribonuclease H2, subunit C [Source:RefSeq peptide;Acc:NP_001252860] |
Retrocopy-Parental alignment summary:
>retro_mmul_284
ATGGAGTGCGGCGACGAGGCGGCCATCGAGAGGCACCGCGTCCACTTGCGCTCCGCCACGCTGCGCGACGCCGCCCCCGT
CGCACTACACCTGCTGCCCTGCGAGGTCGCGGTGGACGGGCCCGCCCCGGTGGGGCGCTTCTTCACGCCTGCCATCCGCC
AGGGCCCCGAGGGACTCGAAGTGTCATTTCGGGGCCGCTGTCTACGGGGCGAGGAGGTGGCGGTGCCGCCTGGCCTCGTG
GGATACGTGATGGTGACGGAAGAGAAGGAAGTGTCCATGGGGAAGCCAGACCACTTGCGGGATTCCGGGACTGACGACCA
AGAAGAGTCGCCGCTGGAACGGGACTTTGACCGCTTCATTGGAGCCACTGCCAGCTTCAGCCACTTCACCTTGTGGGGTC
TGGAGACCATCCCTGGCCCGGATGCCAAAGTGCGTGGGGCCCTAACTTGGCCCAGTCTTGCGGCAGCGATTCACGCACAG
GTGCCCGAGGACTGA
ORF - retro_mmul_284 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 99.39 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MECGDEAAIERHRVHLRSATLRDAAPVALHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLEVSFRGRCLRG |
| MECGDEAAIERHRVHLRSATLRDAAPVALHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLEVSFRGRCLRG | |
| Retrocopy | MECGDEAAIERHRVHLRSATLRDAAPVALHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLEVSFRGRCLRG |
| Parental | EEVAVPPGLVGYVMVTEEKEVSMGKPDPLRDSGTDDQEESPLERDFDRFIGATASFSHFTLWGLETIPGP |
| EEVAVPPGLVGYVMVTEEKEVSMGKPD.LRDSGTDDQEESPLERDFDRFIGATASFSHFTLWGLETIPGP | |
| Retrocopy | EEVAVPPGLVGYVMVTEEKEVSMGKPDHLRDSGTDDQEESPLERDFDRFIGATASFSHFTLWGLETIPGP |
| Parental | DAKVRGALTWPSLAAAIHAQVPED |
| DAKVRGALTWPSLAAAIHAQVPED | |
| Retrocopy | DAKVRGALTWPSLAAAIHAQVPED |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .90 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 10 .87 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 1 .81 RPM |
| SRP007412_heart | 0 .06 RPM | 8 .36 RPM |
| SRP007412_kidney | 0 .00 RPM | 2 .46 RPM |
| SRP007412_liver | 0 .12 RPM | 14 .01 RPM |
| SRP007412_testis | 0 .15 RPM | 2 .00 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_284 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_284 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_284 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000019837 | 1 retrocopy |
retro_mmul_284 ,
|
| Pan troglodytes | ENSPTRG00000038742 | 1 retrocopy |