RetrogeneDB ID:

retro_mmul_287

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:X:115912175..115913045(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMMUG00000017109
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.18116
Ensembl ID:ENSMMUG00000019126
Aliases:PNP, NP
Description:purine nucleoside phosphorylase [Source:RefSeq peptide;Acc:NP_001180480]


Retrocopy-Parental alignment summary:






>retro_mmul_287
ATGGAGAACAGATACACATATGAAGATTATAAGAACACTGCAGAATGGCTTCTGTCTCACACTAAGCACCGACCTCAAGT
TGCAATAATCTGTGGTTCTGGATTAGGAGGTCTGACTGATAAATTAACTCAGGCCCAGATCTTTGACTACAGTGAAATCC
CCAACTTTCCCCAAAGTACAGTGCCAGGTCATGTTGGCCGACTGGTGTTTGGGTTCCTGAATGGCAGAGCCTGTGTGATA
ATGCAGGGCAGGTTCCATATGTATGAAGGGTACTCGCTCTGGAAGGTGACTTTCCCAGTGAGGGTTTTCCACCTTCTGGG
TGTGGACACCCTGGTGGTCACCAATGCAGCAGGAGGGCTGAACCCCGAGTTTGAGGTTGGAGATATCATGCTGATCCGTG
ACCATATCAACCTACCTGGTTTCAGTGGTCAGAACCCTCTCAGAGGGCCCAATGATGAAAGGTTTGGAGTTCGTTTCCCT
GCCATGTCTGATGCCTACGACCGGACTATGAGGCAGAGGGCTCTCAGTATGTGGAAACAAATGGGGGAGCAACGTGAGCT
ACAGGAAGGCACCTATGTGATGCTGGCAGGCCCCAGCTTTGAGACTGTGGCAGAATCTCGTCTGCTGCAGAAGCTGGGAG
CAGATGCTGTTGGCATGAGTACAGTACCAGAAGTTATCGTTGCACGGCACTGTGGACTTCGAGTCTTCGGCTTCTCACTC
ATCACCAACAAGGTCATCATGGATTATGAAAGCTTGGAGAAGGCCAACCATGAAGAAGTATTAGTGGCTGGCAAACAAGC
TGCACAGAAATTGGAACAGTTGGTCTCCATTCTTATGGCCAGCATTCCACTCCCTGACAAAGCCAGTTGA

ORF - retro_mmul_287 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.31 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPQSTVPGHVGRLVF
MEN.YTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPQSTVPGHVGRLVF
RetrocopyMENRYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPQSTVPGHVGRLVF
ParentalGFLNGRACVIMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPEFEVGDIMLIRDHINLPG
GFLNGRACVIMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPEFEVGDIMLIRDHINLPG
RetrocopyGFLNGRACVIMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPEFEVGDIMLIRDHINLPG
ParentalFSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSMWKQMGEQRELQEGTYVMLAGPSFETVAESRLLQ
FSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSMWKQMGEQRELQEGTYVMLAGPSFETVAESRLLQ
RetrocopyFSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSMWKQMGEQRELQEGTYVMLAGPSFETVAESRLLQ
ParentalKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQLVSILMA
KLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVL.AGKQAAQKLEQLVSILMA
RetrocopyKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLVAGKQAAQKLEQLVSILMA
ParentalSIPLPDKAS
SIPLPDKAS
RetrocopySIPLPDKAS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .11 RPM 3 .36 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 8 .17 RPM
SRP007412_cerebellum 0 .00 RPM 2 .52 RPM
SRP007412_heart 0 .00 RPM 0 .88 RPM
SRP007412_kidney 0 .00 RPM 26 .17 RPM
SRP007412_liver 0 .08 RPM 13 .30 RPM
SRP007412_testis 0 .04 RPM 1 .88 RPM

ChIP-Seq - click to see more details

Macaca mulatta was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmul_287 retrocopy.

TSS - click to see more details

Macaca mulatta was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmul_287 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_287 has 0 orthologous retrocopies within eutheria group .

Parental genes homology:
Parental genes homology involve 20 parental genes, and 33 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000053731 retrocopy
retro_amel_1666,
Bos taurus ENSBTAG000000123171 retrocopy
retro_btau_1463,
Choloepus hoffmanni ENSCHOG000000092745 retrocopies
retro_chof_1328, retro_chof_1595, retro_chof_1827, retro_chof_1933, retro_chof_348,
Callithrix jacchus ENSCJAG000000096762 retrocopies
retro_cjac_1195, retro_cjac_1511,
Dasypus novemcinctus ENSDNOG000000116301 retrocopy
retro_dnov_322,
Erinaceus europaeus ENSEEUG000000024111 retrocopy
retro_eeur_541,
Felis catus ENSFCAG000000069341 retrocopy
retro_fcat_1368,
Homo sapiens ENSG000001988051 retrocopy
retro_hsap_2282,
Gorilla gorilla ENSGGOG000000021261 retrocopy
retro_ggor_1695,
Macropus eugenii ENSMEUG000000145123 retrocopies
retro_meug_1282, retro_meug_1560, retro_meug_211,
Macaca mulatta ENSMMUG00000019126 1 retrocopy
retro_mmul_287 ,
Mustela putorius furoENSMPUG000000181192 retrocopies
retro_mputfur_420, retro_mputfur_822,
Nomascus leucogenys ENSNLEG000000109691 retrocopy
retro_nleu_1964,
Otolemur garnettii ENSOGAG000000133444 retrocopies
retro_ogar_1631, retro_ogar_2141, retro_ogar_3083, retro_ogar_594,
Pongo abelii ENSPPYG000000055671 retrocopy
retro_pabe_1938,
Pan troglodytes ENSPTRG000000060951 retrocopy
retro_ptro_1616,
Pteropus vampyrus ENSPVAG000000107341 retrocopy
retro_pvam_1302,
Rattus norvegicus ENSRNOG000000099821 retrocopy
retro_rnor_891,
Tupaia belangeri ENSTBEG000000163781 retrocopy
retro_tbel_4632,
Tarsius syrichta ENSTSYG000000007483 retrocopies
retro_tsyr_2057, retro_tsyr_2127, retro_tsyr_235,


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