RetrogeneDB ID: | retro_mmul_443 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 1:173401957..173402535(+) | ||
| Located in intron of: | ENSMMUG00000000245 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SEPT14 | ||
| Ensembl ID: | ENSMMUG00000019864 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_443
CATGGGTTGTTATCCGATGCCGTGGTAGGGAGTATGTATGAAGTGAAAGTTGGAAAAGGGATGGTCAGAGACCATCACTA
CCCTTGGGGAGTTTTCCAAGTGGAAAATGAAAATCACTGTGACTTCGTTAAGTTCCTAGATATGCTTCTTTGTACCAATA
TGGAGAAATCTAAAAGAAAAAACCCACACTCAGCACTATGAATGTTATAGATATCAAAAACTGCAGAAAATGGGCTTTAC
CGATGTGGGCCCAGACAACCAGCCACTTAGTTTTCAAGACATCTTTGAAGCCAAAAGACAAGACTTCAATGATCAGTGTC
AGAGGGAAGAAGAAGAGTTGAAACAGATTTATGCAGTGAGTCAAGGAGAAAGAAGCAACATTTAAAGAAGCTGAAAAAGA
ACTGCACGACAAGGTCGAGCATCTTAAAACGGTTCAACAGGAGGAGATAAGGAAGCTCGAAGAAGAGAAAAAACAACTGG
AATGAGAAATAATAGATTTTTATAAAATGAAGGCTGCTTCTGAAGCACTGTAGACTCAGCTGAGCACCAATACAAAGAAA
GAAAAACATTGTAAGAGA
ORF - retro_mmul_443 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.08 % |
| Parental protein coverage: | 87.33 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | NALLPFAVVGSMDEVKVGKRMVRGRHYPWGVLQVENENHCDFVKLRDMLLCTNME-NLKEKTHTQHYECY |
| ..LL..AVVGSM.EVKVGK.MVR..HYPWGV.QVENENHCDFVK..DMLLCTNME.NLKEKTHTQHYECY | |
| Retrocopy | HGLLSDAVVGSMYEVKVGKGMVRDHHYPWGVFQVENENHCDFVKFLDMLLCTNME>NLKEKTHTQHYECY |
| Parental | RYQKLEKMGFTDVGPDNQPVSFQEIFEAKRQEFYDQCQREEEELKQ-RFMQRVKEKEATFKEAEKELQDK |
| RYQKL.KMGFTDVGPDNQP.SFQ.IFEAKRQ.F.DQCQR.EEE....RFMQ.VKEKEATFKEAEKEL.DK | |
| Retrocopy | RYQKLQKMGFTDVGPDNQPLSFQDIFEAKRQDFNDQCQR-EEEELK>RFMQ*VKEKEATFKEAEKELHDK |
| Parental | FEHLKMIQQEEIRKLEEEKKQLEGEIIDFYKMKAASEALQTQLSTDTKKDKHRKK |
| .EHLK..QQEEIRKLEEEKKQLE.EIIDFYKMKAASEAL.TQLST.TKK.KH.K. | |
| Retrocopy | VEHLKTVQQEEIRKLEEEKKQLE*EIIDFYKMKAASEAL*TQLSTNTKKEKHCKR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .67 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .16 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .58 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .12 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .04 RPM |
| SRP007412_testis | 0 .04 RPM | 6 .33 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_443 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_443 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_443 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000019864 | 1 retrocopy |
retro_mmul_443 ,
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