RetrogeneDB ID: | retro_mmul_452 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 1:200780878..200781505(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ALKBH8 | ||
| Ensembl ID: | ENSMMUG00000005437 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_mmul_452
TTGCAGGGTGAGAATCTGAATCCAGCCTGAGCTGAAGAGGAGAGGCTAGTTGTTGCCAATGGTGGTTTAGGTAATGGTGT
GAGTAGAAACCAACTGCTCCTGGTTTTAGAGAAATGTGGACTGGTGGATGCTCTCTTAATGCCACCTAACAAGCCCTTCT
CATTTGAAAGATACAAAACTACAGAAGAATCTAAGAGAGCCTATGTTACCCTCAATGGGAAAGAAATAGTGGATGATTTA
GGATGAAAGATTATTCTGTATTTGAATTTTGTGGAAAAAGCACAATGGAAGGAATTGGGGCCTCAAGTCTTACTACCAGG
CCTCATAGTAGTAGAAGAAATAATTTCTTCTGAGGATGAGAAAATTCTTTTGGAAAGTGTTGATTGAACGAAAGATATGG
ACCATCAAAATTTTCAAAAATGCTTGAAACACAGAAGAGTAAAGCATTTTGGTTATGAGTTCCACTGTGACAACAACAAT
GTAGATAAAGATAAGTCTTTGCCTGGGGGTCTTCCTGATGTTTGTGATAGCTTTTTGGAGAAATAGCTGAGGGAGGGTAA
CATTAAACATAAACCTGAACAATTGACCATAAATCAATATTAAGCTGGGCATGACTGCCATGGATTT
ORF - retro_mmul_452 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.9 % |
| Parental protein coverage: | 87.82 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDVLLMPPNKPYSFARYKTTEESKRAYVT |
| L..E...........LVVANGGLGNGVSRNQLL.VLEKCGLVD.LLMPPNKP.SF.RYKTTEESKRAYVT | |
| Retrocopy | LQGENLNPA*AEEERLVVANGGLGNGVSRNQLLLVLEKCGLVDALLMPPNKPFSFERYKTTEESKRAYVT |
| Parental | LNGKEVVDDLGQKIILYLNFVEKAQWKELRPQALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQK |
| LNGKE.VDDLG.KIILYLNFVEKAQWKEL.PQ.L.PGL.VVEEIISSE.EK.LLESVD.T.D.D.QN.QK | |
| Retrocopy | LNGKEIVDDLG*KIILYLNFVEKAQWKELGPQVLLPGLIVVEEIISSEDEKILLESVD*TKDMDHQNFQK |
| Parental | SLKHRRVKHFGYEFHYENNNVDKDKPLPGGLPDICDSFLEKWLREGYIKHKPDQMTINQYEPGQDCHGF |
| .LKHRRVKHFGYEFH..NNNVDKDK.LPGGLPD.CDSFLEK.LREG.IKHKP.Q.TINQY..G.DCHGF | |
| Retrocopy | CLKHRRVKHFGYEFHCDNNNVDKDKSLPGGLPDVCDSFLEK*LREGNIKHKPEQLTINQY*AGHDCHGF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 8 .40 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 7 .77 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 6 .84 RPM |
| SRP007412_heart | 0 .00 RPM | 3 .06 RPM |
| SRP007412_kidney | 0 .12 RPM | 4 .69 RPM |
| SRP007412_liver | 0 .00 RPM | 2 .14 RPM |
| SRP007412_testis | 0 .00 RPM | 3 .47 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_452 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_452 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_452 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000005437 | 1 retrocopy |
retro_mmul_452 ,
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