RetrogeneDB ID: | retro_mmul_815 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 11:65131695..65132050(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MRPL21 | ||
| Ensembl ID: | ENSMMUG00000010124 | ||
| Aliases: | None | ||
| Description: | mitochondrial ribosomal protein L21 [Source:HGNC Symbol;Acc:14479] |
Retrocopy-Parental alignment summary:
>retro_mmul_815
ATTGCCACGGGGCAGTATGGCAGGCTTTTTCCCATGGTGCATTTTGCCAGCCACCAGTTGAAGGTGGCCTCTGAAGATCT
TATCTTAATTGGAAATGAACTAGACCTTGCATGTGGAGAGAGAATTCTACTGGAGAAGGTCCTACTGGTTGGGGCAGACG
ACTTCATGCTGCTTGGCAAGCCACTCCTCAGAAAGGATCTTGTTTGAGTAGAAGCCACAGTCATTGAGAAGACAGAAATA
TGGCCAAGAGTCATTATGAGATTTAGGAAAAGGAAAAGCTTCAAGAAGAAATAATTCATTGTGACCCCTCAGACCGTCCT
CCAGATAAACAGCATTGGAGATTGCTCAATGTTTG
ORF - retro_mmul_815 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.19 % |
| Parental protein coverage: | 56.46 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | IATGQYGRLFAVVHFASRQWKVTSEDLILIGNELDLACGDRIRLEKVLLVGADNFTLLGKPLLGKDLVRV |
| IATGQYGRLF..VHFAS.Q.KV.SEDLILIGNELDLACG.RI.LEKVLLVGAD.F.LLGKPLL.KDLV.V | |
| Retrocopy | IATGQYGRLFPMVHFASHQLKVASEDLILIGNELDLACGERILLEKVLLVGADDFMLLGKPLLRKDLV*V |
| Parental | EATVIEKTESWPRIIMRFRKRKNFKKKRIVVTPQTVLRINSI-EIAPCL |
| EATVIEKTE.WPR.IMRFRKRK.FKKK...VTPQTVL.INSI.EIA.CL | |
| Retrocopy | EATVIEKTEIWPRVIMRFRKRKSFKKK*FIVTPQTVLQINSI>EIAQCL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 10 .76 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .48 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 10 .33 RPM |
| SRP007412_heart | 0 .00 RPM | 17 .90 RPM |
| SRP007412_kidney | 0 .00 RPM | 12 .79 RPM |
| SRP007412_liver | 0 .00 RPM | 6 .61 RPM |
| SRP007412_testis | 0 .00 RPM | 14 .66 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_815 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_815 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_815 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000010124 | 1 retrocopy |
retro_mmul_815 ,
|
| Mus musculus | ENSMUSG00000024829 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000017030 | 1 retrocopy |