RetrogeneDB ID: | retro_mmul_927 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 12:82386368..82387004(+) | ||
| Located in intron of: | ENSMMUG00000015218 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RC3H2 | ||
| Ensembl ID: | ENSMMUG00000021134 | ||
| Aliases: | RC3H2, MNAB | ||
| Description: | RING finger and CCCH-type zinc finger domain-containing protein 2 [Source:RefSeq peptide;Acc:NP_001252931] |
Retrocopy-Parental alignment summary:
>retro_mmul_927
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGAATGTGCACAA
ACCCATCAGTTCAGGTTGTTCACACACTGTTTGCAAGACCTGCTTGAATAAACTTCATCGAAAAGCTTGTCCTTTTGACC
AGACTGCCATCAACACAGATATTGATGTACTTCCTATCAACTTTGCACTTCTCCAGTTAGTTGGAGCCCAGGTACCAGAT
CATCAGTCAATTAAGTTAAGTAATCTAGGTAAGAATAAACACTATGAGGTTGCAAAGAAATGCATTGAGGATTTGGCACT
CTACTTAAAACCACGAAGTAGAGGTAAAGGTGTAGCTAGTTTGAACCAGAGTGCACTGAGCCATCCAATGCAAAGGAAAC
TGGTGACACTTGTAAACTGTCAACTGATGGAGGAAGAAGGTCGCGTAAGAGCCACAAAAGCAGCTCGTTTCCTCGGAGAA
AGAACTGTAACAGAATTGATATTACAACACCAGAACCCTCAGCAGTTGTCTGCCAATCTATGGGCCGCTGTCAGGGCTCG
AGGATGCCAGTTTTTAGGGCCAGGTAAGATAGGTTACTATCTTACCTTTTTTATTAGCTATTGGGGCTTGAGGATC
ORF - retro_mmul_927 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.4 % |
| Parental protein coverage: | 97.24 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL |
| MPVQAAQWTEFLSCPICYNEFDENVHKPIS.GCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLP.NFAL | |
| Retrocopy | MPVQAAQWTEFLSCPICYNEFDENVHKPISSGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPINFAL |
| Parental | LQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC |
| LQLVGAQVPDHQSIKLSNLG.NKHYEVAKKC.EDLALYLKP.S.GKGVASLNQSALS.PMQRKLVTLVNC | |
| Retrocopy | LQLVGAQVPDHQSIKLSNLGKNKHYEVAKKCIEDLALYLKPRSRGKGVASLNQSALSHPMQRKLVTLVNC |
| Parental | QLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPGKIGYYLTFFISK-GL |
| QL.EEEGRVRA..AAR.LGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPGKIGYYLTFFIS..GL | |
| Retrocopy | QLMEEEGRVRATKAARFLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPGKIGYYLTFFISYWGL |
| Parental | RM |
| R. | |
| Retrocopy | RI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .11 RPM | 53 .34 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 41 .49 RPM |
| SRP007412_cerebellum | 0 .13 RPM | 59 .34 RPM |
| SRP007412_heart | 0 .00 RPM | 8 .48 RPM |
| SRP007412_kidney | 0 .12 RPM | 19 .48 RPM |
| SRP007412_liver | 0 .00 RPM | 7 .32 RPM |
| SRP007412_testis | 0 .04 RPM | 41 .39 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_927 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_927 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_927 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macaca mulatta | ENSMMUG00000021134 | 1 retrocopy |
retro_mmul_927 ,
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