RetrogeneDB ID: retro_mmur_1002

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_15716:3805..4400(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MFF
• Ensembl ID: ENSMICG00000013200
• Aliases: None
• Description: mitochondrial fission factor [Source:HGNC Symbol;Acc:24858]

Sequence

>retro_mmur_1002
ATGAGTAAAAGAACAAGCAGTGACACACCACTAGGAAGGGTGAGTGGGGCAGCATTTCCTTCTCCCACTGCTTCTGAGAT
GGTGGAAATTAGTTGAATTCAGTATGAAATGGAATACACTGAAGGTATTAGTCAGCAAATGAAGGTCTCAGAAAAATTAA
AAGTAGCACCACCAAATGCTGACCTGGAGCAAGGATTCCAAGAAGGAGTTCCAAATGCTAGTGTGGTAATGCAAGTTCCA
GAGAGGATTGTTGTAGTAGGAAATAATGAAGACATTTCATTTTCAAGACCAGCAGATCTTGACCTTATTCAGTCAACTCC
CTTTAAACCTCTGGCACTAAAAACACCGCCCCGTGTACTTACACTAAGTGAAAGACCACTAGATTTTCTGGATTTAGAAA
GACCTCCTACAACCCCCTAAAATTGAAGAAATCTGTGCAGTTGGCAGGCTAAAAAGAGAGTGCTCTATGAGTGAAAATGC
TGTTCGCCAAAATGGACAGTTGGTCAGAAATGATTCTATGTGGTACAGATCATATTCTGCCCCAAGAAATAAAATTTCAA
GGTTCCAGGCATGGATTTCTTCACTGGAGTACACT

Alignment

ORF - retro_mmur_1002 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.96 %
• Parental protein coverage: 57.89 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSKRTSSDTPLGRVSGAAFPSPTASEMAEISRIQYEMEYTEGISQRMRVPEKLKVAPPNADLEQGFQEGV
          MSKRTSSDTPLGRVSGAAFPSPTASEM.EIS.IQYEMEYTEGISQ.M.V.EKLKVAPPNADLEQGFQEGV
Retrocopy MSKRTSSDTPLGRVSGAAFPSPTASEMVEIS*IQYEMEYTEGISQQMKVSEKLKVAPPNADLEQGFQEGV

Parental  PNASVIMQVPERIVVAGNNEDISFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPPTTPQ
          PNASV.MQVPERIVV.GNNEDISFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPPTTP.
Retrocopy PNASVVMQVPERIVVVGNNEDISFSRPADLDLIQSTPFKPLALKTPPRVLTLSERPLDFLDLERPPTTP*

Parental  N-EEIRAVGRLKRERSMSENAVRQNGQLVRNDSMWHRSDSAPRNKISRFQAPISAPEYT
          N.EEI.AVGRLKRE.SMSENAVRQNGQLVRNDSMW.RS.SAPRNKISRFQA.IS..EYT
Retrocopy N>EEICAVGRLKRECSMSENAVRQNGQLVRNDSMWYRSYSAPRNKISRFQAWISSLEYT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1002 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1002 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000021319	2 retrocopies	retro_btau_1233, retro_btau_826,
Callithrix jacchus	ENSCJAG00000012973	1 retrocopy	retro_cjac_4058,
Cavia porcellus	ENSCPOG00000011881	1 retrocopy	retro_cpor_803,
Homo sapiens	ENSG00000168958	2 retrocopies	retro_hsap_3391, retro_hsap_347,
Microcebus murinus	ENSMICG00000013200	1 retrocopy	retro_mmur_1002 ,
Nomascus leucogenys	ENSNLEG00000013420	1 retrocopy	retro_nleu_1706,