RetrogeneDB ID: retro_mmur_1038

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_16951:11499..11937(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CMBL
• Ensembl ID: ENSMICG00000000533
• Aliases: None
• Description: carboxymethylenebutenolidase homolog (Pseudomonas) [Source:HGNC Symbol;Acc:25090]

Sequence

>retro_mmur_1038
ACAAAGAATGCCCGGAAGATCGATAGAGAGGTCGATGCTGTCTTGAGGTACCTGAAACAACAGGGTCATGCCCAGAAAAT
TGGCGACGTGGGATTCTGCTGGAGTGGGACTGCCGTCCACCACTTGATGATGAAATACTCAGAGCTCAGGGCGGGGGTTT
CCATCTACGGCATCATCAAAGATTCTGAAGACATTTACAGTTTAAAGAACCCCACGCTGTTCATTTTTGCTGAAAATGAT
GCTGTGATTCCACTTGAGCAAGTCTCTTTGCTGACCCAGAAGTTGAAGGAACACTGCAAAGCTGCATATCAAATTAAAAC
ATTTTCTGGGCAAACTCATGGCTTCGTGCATCGAAAGAGAGAAGACTGCTCACCTGAAGACAAGCCCTACATTGACGAGG
CGAGAAGGAATTTACTCGAGTGGCTGAGCAAGTACATT

Alignment

ORF - retro_mmur_1038 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.15 %
• Parental protein coverage: 59.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TKNARKIDKEVDAVLRYLKQQCHAQKIGVVGFCWGGAAVHHLMMKYSELRAGVSVYGIVKDSEDVYSLKN
          TKNARKID.EVDAVLRYLKQQ.HAQKIG.VGFCW.G.AVHHLMMKYSELRAGVS.YGI.KDSED.YSLKN
Retrocopy TKNARKIDREVDAVLRYLKQQGHAQKIGDVGFCWSGTAVHHLMMKYSELRAGVSIYGIIKDSEDIYSLKN

Parental  PTLFIFAENDAVIPLEQVSLLTQKLKEHCKVAYQIKTFSGQTHGFVHRKREDCSPEDKPYIDEARRNLLE
          PTLFIFAENDAVIPLEQVSLLTQKLKEHCK.AYQIKTFSGQTHGFVHRKREDCSPEDKPYIDEARRNLLE
Retrocopy PTLFIFAENDAVIPLEQVSLLTQKLKEHCKAAYQIKTFSGQTHGFVHRKREDCSPEDKPYIDEARRNLLE

Parental  WLNKYI
          WL.KYI
Retrocopy WLSKYI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1038 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1038 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000009759	1 retrocopy	retro_chof_2582,
Callithrix jacchus	ENSCJAG00000009079	1 retrocopy	retro_cjac_613,
Dasypus novemcinctus	ENSDNOG00000024697	2 retrocopies	retro_dnov_1840, retro_dnov_2561,
Microcebus murinus	ENSMICG00000000533	1 retrocopy	retro_mmur_1038 ,
Otolemur garnettii	ENSOGAG00000016909	1 retrocopy	retro_ogar_2398,
Tupaia belangeri	ENSTBEG00000001698	1 retrocopy	retro_tbel_4449,