RetrogeneDB ID: retro_mmur_1071

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_19172:465..879(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRD5A3
• Ensembl ID: ENSMICG00000000317
• Aliases: None
• Description: steroid 5 alpha-reductase 3 [Source:HGNC Symbol;Acc:25812]

Sequence

>retro_mmur_1071
GCTGTCCGTGTTCTTAGTGCTCGTGTCTACGTCAGCGTGTTCTCCAATGCCGTGATTCACATCGTGCAGTACTGCTTTGG
CCTTGCCTACTATGTGCTCGTGGGCCTCACGGTGCTGAGCCAGGTGCCGCTGGACGGCAGGCATGTCTATATAATAGGGA
AAAACCTAGTGATGCAGGCGCGGTGGTTCCATATCCTCGGCATGCTGATGTTCATCTGGTCATCTGCCCATCAGTACAAG
TGCCACGTCATTCTCAGCAATCTCAGGAAAAATAAAGCAGGCGTGGTCATTCACTGCAACCACAGAATCCCTTTCGGAGA
CTGGTTCAAATACCTTTCCTCCCCCAACTACTTGGCGGAGCTGATGATCTACATTTCCATGGCCGTCACCTTTGGGTTCC
ACAACTTAACTTGG

Alignment

ORF - retro_mmur_1071 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.03 %
• Parental protein coverage: 67.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SLRRLFECFYVSVFSNAVIHVVQYCFGLAYYVLVGLTVLSQVPLDGRHVYIIGKNLVMQARWFHILGMLM
          ..R.L....YVSVFSNAVIH.VQYCFGLAYYVLVGLTVLSQVPLDGRHVYIIGKNLVMQARWFHILGMLM
Retrocopy AVRVLSARVYVSVFSNAVIHIVQYCFGLAYYVLVGLTVLSQVPLDGRHVYIIGKNLVMQARWFHILGMLM

Parental  FIWSSAHQYKCHVILGNLRKNKAGVVIHCNHRIPFGDWFEYVSSPNYLAELMIYISMAVTFGFHNLTW
          FIWSSAHQYKCHVIL.NLRKNKAGVVIHCNHRIPFGDWF.Y.SSPNYLAELMIYISMAVTFGFHNLTW
Retrocopy FIWSSAHQYKCHVILSNLRKNKAGVVIHCNHRIPFGDWFKYLSSPNYLAELMIYISMAVTFGFHNLTW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1071 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1071 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000004093	1 retrocopy	retro_chof_1211,
Microcebus murinus	ENSMICG00000000317	1 retrocopy	retro_mmur_1071 ,
Pan troglodytes	ENSPTRG00000016070	1 retrocopy	retro_ptro_798,
Tursiops truncatus	ENSTTRG00000000958	1 retrocopy	retro_ttru_913,