RetrogeneDB ID: retro_mmur_1072

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_1994:82892..83164(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP6
• Ensembl ID: ENSMICG00000003588
• Aliases: None
• Description: receptor accessory protein 6 [Source:HGNC Symbol;Acc:30078]

Sequence

>retro_mmur_1072
TTGACACTGGTATTCAGTTATGGAGCCTCTTTCCTCTGCATTCTGATAGGATTTGGCTACCCAGCCTACATCTCAATTAA
AGCCATAGAGAGTTCTAGCAAAGAAGATGATGCCCTGTGGCTGACCTACTGGATAGTGCACAGTGTATTTGGCATAGCTG
AATTCTTCTCTGATCTCTTCCTGTCATGGTTCTCTTCTACTACAAGCTGAAGCATGGCTTCCTATGGTGGTGCATGGCCC
CAAGCCCTTCTCATGGGGCGGAACTGCTCTAT

Alignment

ORF - retro_mmur_1072 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.13 %
• Parental protein coverage: 62.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LYLLFGYGASLLCNVIGFAYPAYASIKAIESPSKEDDTVWLTYWVVYALFGLVEFFSDLLLFWFP-FYYV
          L.L.F.YGAS.LC..IGF.YPAY.SIKAIES.SKEDD..WLTYW.V...FG..EFFSDL.L.WF..FYY.
Retrocopy LTLVFSYGASFLCILIGFGYPAYISIKAIESSSKEDDALWLTYWIVHSVFGIAEFFSDLFLSWFS<FYYK

Parental  GKCAFLLFCMMPGPWNGALMLY
          .K..FL..CM.P.P..GA..LY
Retrocopy LKHGFLWWCMAPSPSHGAELLY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1072 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1072 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000003588	1 retrocopy	retro_mmur_1072 ,
Monodelphis domestica	ENSMODG00000005050	1 retrocopy	retro_mdom_1574,
Sarcophilus harrisii	ENSSHAG00000012645	1 retrocopy	retro_shar_657,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,