RetrogeneDB ID: | retro_mmur_1079 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_2058:284822..286442(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | IKBKB | ||
| Ensembl ID: | ENSMICG00000006581 | ||
| Aliases: | None | ||
| Description: | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta [Source:HGNC Symbol;Acc:5960] |
Retrocopy-Parental alignment summary:
>retro_mmur_1079
ATACTTTCTTTACTAAGTGACATAGGGTCTGGGATTCGATACTTGCATGCAAACAAAATTATACATCGAGATCTAAAACC
TGAAAATATAGTTCTTCAGGATGTTGGTGGAAAGATAACGCATAAAATAATTGATCTAGGTTATGCCAAAGATGTTGATC
AAGGAAGCCTGTGTACATCTTTTGTGGGGACACTGCAGTATCTGGCCCCAGAGCTCTTTGAGAATAAGCCTTACACAGCC
ACTGTTGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCGGGATACAGGCCTTTTTTGCATCATCTGCAGCC
ATTTACCTGCCATGAGAAGATTAAGAAGAAGGATCCAAAGTGTATATTTGCATGTGAAGAGATGACAGGAGAAGTTCGGT
TTAGTACCCATTTACCTCAGCCAAATAGCCTTTGTAGTTTAATGGTAGAACCCATGGAAAACTGGCTACAATTGATGTTG
AATTGGGACCCTCAGCAGAGAGGAGGACCTGTTGATCTTACTTTGAAGCAGCCAAGATGTTTTGTATTAATGGATCACAT
TCTGAATTTGAAGATAGTACATATCCTAAATATGACTTCTGCAAAGATAATTTCTTTTTTGTTACCACCTGATGAAAGTC
TTCATTCACTGCAGTCTCGTATTGAGCGTGAAACTGGGATAAGTACTGTTTCTCAAGAGCTGCTTTCAGAAACAGGCATT
TCTCTGGATCCTCGGAAACCAGCTTCCCAGTGTGTTCTAGATGGAGTTAGAGGCTGTGATAGCTATATGGTTTATTTGTT
TGATAAAAGTAAGACTGTATATGAAGGGCCATTTGCTTCCAGAAGTTTATCTGATTGTGTAAATTATATTGTACAGGACA
GCAAAATACAGCTTCCAATTATACAGCTGCGTAAAGTATGGGCTGAAGCAGTGCACTATGTGTCTGGGCTAAAAGAAGAC
TACAGCAGGCTCTTTCAGGGACAAAGAGCAGCAATGTTAAGTCTTCTTAGATATAATGCTAACTTGACAAAAATGAAGAA
CACTTTGATCTCAGCATCACAGCAACTGAAAGCTAAATTGCAGTTTTTTCACAAAAGCATTCAGCTTGACTTGGAGAGAT
ATAGTGAGCAGATGACTTACGGGATATCTTCAGAAAAAATGCTAAAAGCATGGAAAGAAATGGAAGAAAAGGCCATCCAC
TATGCTGAGGTTGGTGTCATTGGATACCTGGAGGATCAGATTATGTCCTTGCACACTGAAATCATGGAGCTACAGAAGAG
CCCCTATGGAAGACGTCAGGGAGATTTGATGGAATCTCTGGAACAGCGTGCCATTGATCTATATAAACAGTTAAAGCACA
GACCTTCAGATCACTCCTACAGTGACAGCACAGAGATGGTGAAGATCATTGTGCATACTGTACAGAGTCAGGATCGTGTT
CTCAAGGAGCTGTTTGGTCATCTGAGCAAGTTGTTGGGCTGTAAGCAGAAGATTATTGATCTACTCCCCAAGGTGGAAGT
GGCCCTCAGTAACATCAAAGAAGCTGACAATACTGTCATGTTTATGCAGGGAAAGAGGCAGAAAGAAATATGGCATCTCC
TTAAAATTGCTTGTACACAG
ORF - retro_mmur_1079 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.19 % |
| Parental protein coverage: | 77.13 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | ILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYAKELDQGSLCTSFVGTLQYLAP |
| IL.LLSDI.S..RYLH.N.IIHRDLKPENIVLQ.......HKIIDLGYAK..DQGSLCTSFVGTLQYLAP | |
| Retrocopy | ILSLLSDIGSGIRYLHANKIIHRDLKPENIVLQDVGGKITHKIIDLGYAKDVDQGSLCTSFVGTLQYLAP |
| Parental | ELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEMDIVVSEDLNGAVKFSSSLPY |
| EL.E...YT.TVDYWSFGT..FECI.G.RPFL...QP...H.K...K....I...E...G.V.FS..LP. | |
| Retrocopy | ELFENKPYTATVDYWSFGTMVFECIAGYRPFLHHLQPFTCHEKIKKKDPKCIFACEEMTGEVRFSTHLPQ |
| Parental | PNNLNSVLAQRLKKWLQLMLMWHPRQRG--TDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTE |
| PN.L.S........WLQLML.W.P.QRG...D.T.....CF...D.ILNLK.VHILNM....I....... | |
| Retrocopy | PNSLCSLMVEPMENWLQLMLNWDPQQRGGPVDLTLKQPRCFVLMDHILNLKIVHILNMTSAKIISFLLPP |
| Parental | DESLQSLKARIQQDTGIPEKDQELLQEAGLALIPEKPATQCISDSKLNEGRTLDMDLVFLFDNSKVNYET |
| DESL.SL..RI...TGI....QELL.E.G..L.P.KPA.QC.....L...R..D...V.LFD.SK..YE. | |
| Retrocopy | DESLHSLQSRIERETGISTVSQELLSETGISLDPRKPASQCV----LDGVRGCDSYMVYLFDKSKTVYEG |
| Parental | QISPRPQPESVSCILQEPKRNLSFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMK |
| ....R.....V..I.Q..K..L...QLRKVW....H....LKED..RL.QGQRAAM..LLR.N..L.KMK | |
| Retrocopy | PFASRSLSDCVNYIVQDSKIQLPIIQLRKVWAEAVHYVSGLKEDYSRLFQGQRAAMLSLLRYNANLTKMK |
| Parental | NSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKHLVERMMA |
| N...S.SQQLKAKL.FF..SIQ.DLE.YSEQ...GI.S.K.L.AW.EME..............L....M. | |
| Retrocopy | NTLISASQQLKAKLQFFHKSIQLDLERYSEQMTYGISSEKMLKAWKEMEEKAIHYAEVGVIGYLEDQIMS |
| Parental | LQTDIVDLQRSPMGRKPGGTLDDLEEQARELYRRLREKPRDQRTDGDSQEMVRLLLQAIQGFEKKVRVIY |
| L.T.I..LQ.SP.GR..G.....LE..A..LY..L...P.D.....DS.EMV.......Q.......... | |
| Retrocopy | LHTEIMELQKSPYGRRQGDLMESLEQRAIDLYKQLKHRPSD-HSYSDSTEMVKIIVHTVQSQDRVLKELF |
| Parental | TQLSKTVVCKQKALELLPKVEEVVELMNEDEKTVVRLQEKRQKELWNLLKIACSK |
| ..LSK...CKQK...LLPKVE.......E...TV...Q.KRQKE.W.LLKIAC.. | |
| Retrocopy | GHLSKLLGCKQKIIDLLPKVEVALSNIKEADNTVMFMQGKRQKEIWHLLKIACTQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1079 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1079 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000006581 | 1 retrocopy |
retro_mmur_1079 ,
|