RetrogeneDB ID: retro_mmur_111

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1314:292284..292667(-)
• Located in intron of: ENSMICG00000013313

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM57A
• Ensembl ID: ENSMICG00000009347
• Aliases: None
• Description: family with sequence similarity 57, member A [Source:HGNC Symbol;Acc:29646]

Sequence

>retro_mmur_111
CTGGTTTCTTCAGTGCAGGCTGTGCTGGCCACTGGGTCGGGCATCGTCATCTAAGCTCCTGCAGCGACGTGGTCAACGGC
AGGCACTGGCTTGCCCGAGAATATGTCTGGTTTTTGATTCCATACATGGTCTATGACTCCTACGCCATGTACCTCAGTGA
ATGGTACTGAACCAGAGATCAGAACCATGGGCACTCCACCACTTTTAGAAACTTCCTAAGTCAAAACCGCCTCATGATCA
CAAACAATGAGGCCATTCTATTTGTCCTTGTGCCAGTTGCACAGAGGCTCCGGGGAGACCTGGGGAACTTCTTTGTCGGC
TGCATCTTCACAGCAGAACTGAGCACTCCATTTGTGTCACTGAGCAGAATTCTGATTCACCTA

Alignment

ORF - retro_mmur_111 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.77 %
• Parental protein coverage: 99.23 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVSSVQAVLATGSGIVVV-LSSCSDVVNGRHWLAREYVWFLIPYMVYDSYAMYLSEWYRTRDQNHGHSTT
          LVSSVQAVLATGSG..V..LSSCSDVVNGRHWLAREYVWFLIPYMVYDSYAMYLSEWY.TRDQNHGHSTT
Retrocopy LVSSVQAVLATGSG-IVI<LSSCSDVVNGRHWLAREYVWFLIPYMVYDSYAMYLSEWY*TRDQNHGHSTT

Parental  FRNFLSQNRLMITHHAAILFVLVPVAQRLRGDLGDFFVGCIFTAEMSTPFVSLGRILIHV
          FRNFLSQNRLMIT...AILFVLVPVAQRLRGDLG.FFVGCIFTAE.STPFVSL.RILIH.
Retrocopy FRNFLSQNRLMITNNEAILFVLVPVAQRLRGDLGNFFVGCIFTAELSTPFVSLSRILIHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_111 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_111 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019129	1 retrocopy	retro_cfam_1644,
Echinops telfairi	ENSETEG00000019235	1 retrocopy	retro_etel_7,
Loxodonta africana	ENSLAFG00000017562	1 retrocopy	retro_lafr_518,
Microcebus murinus	ENSMICG00000009347	1 retrocopy	retro_mmur_111 ,