RetrogeneDB ID: retro_mmur_1129

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_24359:9152..9944(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TCAIM
• Ensembl ID: ENSMICG00000013576
• Aliases: None
• Description: T cell activation inhibitor, mitochondrial [Source:HGNC Symbol;Acc:25241]

Sequence

>retro_mmur_1129
TGGCAGAGGAGCTGGGGCATTGCCCATCGCTGTAGCCAGCTGCACAGTTTAGGCCGATTAGCACAACAGAACTTGGAAAC
ACTTAAGAAAGCAAAAGGATGCACCGTCCTATTCACAGACCATTCTGGCGTGAGTACAGTGGGCCATGTGGTGCTGGGAA
CGATGGATGTCCATCACTACTGGGTGAAGCTTTTTGAAAGATTGCCAAGTTATTTTGACCTTCAGAGGAAGCTGATGCTT
TTAGAAGACCAAATAAGCTATCTTTTAGGTGGCATACAAGTTGTTTATATCGACGAATTACAGCCAGTATTGACACTTGA
AGAATATTACTCTCTTCTTGATGTGTTCTATAATAGGATACTGGAAAATAGAATGCCTTTTCACTCTCAAAGTCTGTGTG
GTTTACAAATGATCCTTAACAGTGACAGATATGCTCCAAGCCTGCATGAACTCGGGCATTTCAACATCCCAGTACTCTGT
GATTTAGCAAATCTCCAATGGTTTATTCTCACCAAAGCTCAGCAGGCAAGAGAGAACATGAAAAGAAAGGAAGAGTTAAA
GGTTATTGAGAATGAATTGATACAGGTTTCAACAAGGAAATTTTCTCTGGAGAAGTTATATAAGGAGCCCAGCATTTCTA
GTATACAAATGGCGGATTGCTGTAAGAGACTTCTAGAACAATCACTGCCTTATCTACATGGGATGCACCTGTGTGTTTCA
CATTTTTACTCTGTTATGCAAGACAGAGACCTTTGTATTCCTTGGAATTGGAAGAATGGAGAAGCCATTAAG

Alignment

ORF - retro_mmur_1129 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.67 %
• Parental protein coverage: 53.23 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WQRSWGIAHRCSQLHSLGRLAQXXXXXXXXXXXCTVLFTDRSGVSAVGHVMLGTMDVHHHWVKLFERLPS
          WQRSWGIAHRCSQLHSLGRLAQ...........CTVLFTD.SGVS.VGHV.LGTMDVHH.WVKLFERLPS
Retrocopy WQRSWGIAHRCSQLHSLGRLAQQNLETLKKAKGCTVLFTDHSGVSTVGHVVLGTMDVHHYWVKLFERLPS

Parental  YFDLQRKLMLLEDQISYLLGGIQVVYIDELQPVLTLEEYYSLLDVFYNRILESRMPFHPQSLRGLQMILN
          YFDLQRKLMLLEDQISYLLGGIQVVYIDELQPVLTLEEYYSLLDVFYNRILE.RMPFH.QSL.GLQMILN
Retrocopy YFDLQRKLMLLEDQISYLLGGIQVVYIDELQPVLTLEEYYSLLDVFYNRILENRMPFHSQSLCGLQMILN

Parental  SDRYAPSLHELGHFNIPVLCDLANLQWFILTKAQQARENMKRKEELKVIENELIQASTKKFSLEKLYKEP
          SDRYAPSLHELGHFNIPVLCDLANLQWFILTKAQQARENMKRKEELKVIENELIQ.ST.KFSLEKLYKEP
Retrocopy SDRYAPSLHELGHFNIPVLCDLANLQWFILTKAQQARENMKRKEELKVIENELIQVSTRKFSLEKLYKEP

Parental  SISSIQMVDCCKRLLEQSLPYLHGMHLCVSHFYSVMQDGDLCIPWNWKNGEAIK
          SISSIQM.DCCKRLLEQSLPYLHGMHLCVSHFYSVMQD.DLCIPWNWKNGEAIK
Retrocopy SISSIQMADCCKRLLEQSLPYLHGMHLCVSHFYSVMQDRDLCIPWNWKNGEAIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1129 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1129 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013576	1 retrocopy	retro_mmur_1129 ,