RetrogeneDB ID: retro_mmur_1139

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_25034:1432..2307(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANAPC7
• Ensembl ID: ENSMICG00000005476
• Aliases: None
• Description: anaphase promoting complex subunit 7 [Source:HGNC Symbol;Acc:17380]

Sequence

>retro_mmur_1139
ATGGATGTGTATGGCTACCTACTGGCACGAAAAGGGCAGCTGGAGGATGTGGAGAACCTTGGCTGCCGCCTTTTCAATAT
TTCCGATCAGCATGCAGAACCATGGGTGGTTTCCGGGTGTCACAGCTTCTATAGCAAACGTTATTCTCAGGCCCTTTATT
TAGGAGCCAAAGCCATTCAGCTGAATAGTAATAGTGTTCAAGCTTTGCTACTTAAGGGAGCAGCACTTAGGAACATGGGC
AGAGTCCAACAAGCAATAATACATTTTCGGAAGGCCATACGGCTGGCACCTTGTCACTTAGATTGTTATGAAGGTCTCAT
CGAATGTTACTTAGCCTCCAACAGTATTCGGGAAGCAATGGTGATGGCTAACAACGTCTACAAAACTCTAGGAGCCAATG
CACAGACCCTTACCCTTTTAGCCACTGTTTGTCTTGAAGACCCAGTGACATAGGAGAAAGCCAAAACTTTATTAGATAAA
GCCCTGACCCAAAGGCCGGATTACATTAAGGCTGTGGTGAAAAAAGCAGAACTACTTAGCAGAGAACAGAAATATGAAGA
TGGAATTGCTTTGCTGAGGAATGCACTGGCTAATCAGAGTGACTGTGTCCTGCATCGGATCCTTGGAGATTTCCTTGTAG
CTGTCAGTGAGTATCAGGAAGCAATGGACCAGTATAGTATAGCAGTAAGTTTGGACCCCAATGACCAGAAGTCTCTAGAG
GGATGCAGAAGATGGAGAAGGAGGAAAGTCCCACAGATGCCACTCAGGAGGAGGATGTGGACGACATGGAAGGGAGTGGG
GAAGAAAGGAACCTGGAGGGCAGCGACAATGAGGCGGCCCAGTGGGCTGACCAGGAGCAGTGGTTTTGCATGCAG

Alignment

ORF - retro_mmur_1139 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.22 %
• Parental protein coverage: 54.99 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALL
          MDVYGYLLAR.G.LEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYS.ALYLGAKAIQLNSNSVQALL
Retrocopy MDVYGYLLARKGQLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSQALYLGAKAIQLNSNSVQALL

Parental  LKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLL
          LKGAALRNMGRVQ.AIIHFR.AIRLAPC.LDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLL
Retrocopy LKGAALRNMGRVQQAIIHFRKAIRLAPCHLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLL

Parental  ATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGD
          ATVCLEDPVT.EKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGD
Retrocopy ATVCLEDPVT*EKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGD

Parental  FLVAVNEYQEAMDQYSIALSLDPNDQKSLE-GMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEA
          FLVAV.EYQEAMDQYSIA.SLDPNDQKSLE.GMQKMEKEESPTDATQEEDVDDMEGSGEE..LEGSD.EA
Retrocopy FLVAVSEYQEAMDQYSIAVSLDPNDQKSLE<GMQKMEKEESPTDATQEEDVDDMEGSGEERNLEGSDNEA

Parental  AQWADQEQWFGMQ
          AQWADQEQWF.MQ
Retrocopy AQWADQEQWFCMQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1139 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1139 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000005476	1 retrocopy	retro_mmur_1139 ,