RetrogeneDB ID: retro_mmur_1197

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_30895:5170..6322(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EPN2
• Ensembl ID: ENSMICG00000005739
• Aliases: None
• Description: epsin 2 [Source:HGNC Symbol;Acc:18639]

Sequence

>retro_mmur_1197
TCCACCTCCCGGAGGGTGTCCTCTGAGCTGGAGCAAGCCCGGCCCCAGACTAGCGGAGAAGAGGAGCTTCAGCTGCAGCT
GGCACTAGCCATGAGCAGAGAAGTGGCCGAGCAGGAAGAACGCCTCCGGCGGGGTGATGACCTCAGACTGCAGATGGCCC
TAGAGGAAAGCCGAATGGACACAGTTAAAGTTCCAAAAAAGAAAAAGCACGGCTCCCACCCACAGCAGACCACCCTGTTG
GATTTCATGGACGCTCTCTCCAGCTCAGGCCCTGCTGCCGGGAAAGCGGAGCCCTGGGGCCTGTCGGCCTCAGCTAACCA
GACCAACCCCTGGGGCGGGCCAGCGGCTCCTGAGAGCACTTTGGATCCCTGGCCATCATTCGGTGCCAAACCAGCTGCCT
CTGTTGACCCATGGGGAGTGCCTACCGGAGCCAGCACACACTCTGTCCCCAAGAGCTCAGACCCCTGGGCCACTTCACAG
CAGCCTGCCCCCAGTGCTGGGAAAACCACCTCTGACACCTGGGGCACAGTCTCAGCCACCAAGCCAGTATCTGCCTCTAG
GTCCTTTGAGCTCTTCAGTAATCTGAAGGGTACAATTAAAGACGACTTTCCTGAATTTGACAACTTCCGAACTTCAAAAA
AACCAGCTGAATCTGTGGCCTTGCTGCCATCCCAAAACAATGGAACCACAAGCCCTGACCCCTTTGAGTCTCAACCCCTG
ACCATTGCCTCGAGCAAGCCCAGCAGTGCCCGGAAAACACCTGAGTCCTTCCTGGGTCCCAACGCGGCCCTAGTAAACCT
GGACTCACTGGTGACCAGGCCCACCCTGCCAGCCCAGTCGCTCAACCCTTTCCTGGCACCAGGTGCAGCCGCCGCCTCCA
CCCCTGTCAACCCCTTCCAGGTGAACCAGCCCCAGCCACTGACGCTGAACCAGCTGCGGGGCAGCCCCGTCCTGGGCACC
AGCACGTCCTTCGGGCCTGGCCCTGGGGTGGAGCCCATGGCTGTGGCCTCCAGGACCTCCACGGCCCCACACTCAGCTCT
GGGAGCCAGTGGTTCTTCTCTGACATCACTGGGGCCCACGATGAAGAATATGGTGGGCAGCGTGGGCATCCCCCCATCGG
CAGCTCAGGCCACTGGCACAACCGACCCTTTC

Alignment

ORF - retro_mmur_1197 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.62 %
• Parental protein coverage: 59.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKVPKKKEH
          .TS.RVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESR.DTVKVPKKK.H
Retrocopy STSRRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRMDTVKVPKKKKH

Parental  GSHPQQTTLLDLMDALPSSGPAAQKTEPWGSSASANHTNPWGGSAAPESTSDPWPSFGAKPAASVDPWGV
          GSHPQQTTLLD.MDAL.SSGPAA.K.EPWG.SASAN.TNPWGG.AAPEST.DPWPSFGAKPAASVDPWGV
Retrocopy GSHPQQTTLLDFMDALSSSGPAAGKAEPWGLSASANQTNPWGGPAAPESTLDPWPSFGAKPAASVDPWGV

Parental  PAGASTHSVPKSSDPWAASQQPAPSAGKTTSDTWSAVSATKPVSASGSFELFSNLNGTVKDDFSEFDNLR
          P.GASTHSVPKSSDPWA.SQQPAPSAGKTTSDTW..VSATKPVSAS.SFELFSNL.GT.KDDF.EFDN.R
Retrocopy PTGASTHSVPKSSDPWATSQQPAPSAGKTTSDTWGTVSATKPVSASRSFELFSNLKGTIKDDFPEFDNFR

Parental  TSKKTAESVASLPSQNNGTTSPDPFESQPVTIASSKSSSARKTPESFLGPNAALVNLDSLVTRPAPPAQS
          TSKK.AESVA.LPSQNNGTTSPDPFESQP.TIASSK.SSARKTPESFLGPNAALVNLDSLVTRP..PAQS
Retrocopy TSKKPAESVALLPSQNNGTTSPDPFESQPLTIASSKPSSARKTPESFLGPNAALVNLDSLVTRPTLPAQS

Parental  LNPFLAPGAAAASAPVNPFQVNQPQPLTLNQLRGSPVLGTSMSFGPGPGVEPMAVASMTSTAPNSALGAS
          LNPFLAPGAAAAS.PVNPFQVNQPQPLTLNQLRGSPVLGTS.SFGPGPGVEPMAVAS.TSTAP.SALGAS
Retrocopy LNPFLAPGAAAASTPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVEPMAVASRTSTAPHSALGAS

Parental  GSSLTSLGPATMNMVGSVGMPPSAAQATGTTNPF
          GSSLTSLGP...NMVGSVG.PPSAAQATGTT.PF
Retrocopy GSSLTSLGPTMKNMVGSVGIPPSAAQATGTTDPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1197 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1197 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000005739	1 retrocopy	retro_mmur_1197 ,