RetrogeneDB ID: retro_mmur_1203

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_322:26047..26311(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000006676
• Aliases: None
• Description: None

Sequence

>retro_mmur_1203
TTGCTTGGAAGTTACTTCATTCTTTTTCTCTTTTTCAAAAGTGCATCTTGTGGCACCAGCTGCTTTTTGCAGAAGGAATG
CTTATTTTTTGAGAGGACATTCTGGCTATACCACGTCATCATAAAGTTCTTTTGTTTTTTCCTTCTCTTTGTGGAAGTGG
AAAATGGATTCATTTTCATTTTCCTCCTCACTTATTCTTTTCAGTCTGTCTTTCCAGTCATTGCAGTTGCCAGCCTTGTC
TCCTTGTCAGATTTTGGCTTTTTA

Alignment

ORF - retro_mmur_1203 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.97 %
• Parental protein coverage: 97.87 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LLGSYFILFLFFKSASRSASLELTCFSRKERLVFDRTFWLYLIIIKFFCFFFSLFVELENGFIFVFFLTN
          LLGSYFILFLFFKSAS...S....CF..KE.L.F.RTFWLY..IIKFFCFF..LFVE.ENGFIF.F.LT.
Retrocopy LLGSYFILFLFFKSASCGTS----CFLQKECLFFERTFWLYHVIIKFFCFFL-LFVEVENGFIFIFLLTY

Parental  SFRSVFPA-QHKNLVSLSDFGFL
          SF.SVFP......LVSLSDFGFL
Retrocopy SFQSVFPVIAVASLVSLSDFGFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1203 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1203 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000268788	2 retrocopies	retro_hsap_2447, retro_hsap_3938,
Gorilla gorilla	ENSGGOG00000027929	1 retrocopy	retro_ggor_1523,
Microcebus murinus	ENSMICG00000006676	1 retrocopy	retro_mmur_1203 ,
Pongo abelii	ENSPPYG00000014851	2 retrocopies	retro_pabe_1798, retro_pabe_3246,