RetrogeneDB ID: retro_mmur_1207

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_3243:24086..24377(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ITPA
• Ensembl ID: ENSMICG00000013833
• Aliases: None
• Description: inosine triphosphatase (nucleoside triphosphate pyrophosphatase) [Source:HGNC Symbol;Acc:6176]

Sequence

>retro_mmur_1207
AAGATCGTGTTTGTCACGGGGAACGCCAAGAAGCTGGAAGAGGTCATTCAGATTCTAGGAGATAAGTTTCCATGCACTTT
GGTGGCACAGAAGACTGACCTGCCGGAGTACCAGGGGAAGCCGGATGAGATTTCCATACAGAAGTGTCAGGAGGCGGCTC
GCCAGGTAAAGGAGCCTGTCCTGGTGGAGGACACCTGTCTGTGCTTCAACGTCCTCGGAGGGCTCCCTGGCCCCTACATA
AAGTGGTTTCTGGAGAAGCTAAAGCCTGAAGGTCTCCACCAGCTCCTGGCC

Alignment

ORF - retro_mmur_1207 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.85 %
• Parental protein coverage: 50.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KIVFVTGNAKKLEEVIQILGDKFPCTLVAQKIDLPEYQGEPDEISIQKCREAARQVKGPVLVEDTCLCFN
          KIVFVTGNAKKLEEVIQILGDKFPCTLVAQK.DLPEYQG.PDEISIQKC.EAARQVK.PVLVEDTCLCFN
Retrocopy KIVFVTGNAKKLEEVIQILGDKFPCTLVAQKTDLPEYQGKPDEISIQKCQEAARQVKEPVLVEDTCLCFN

Parental  ALGGLPGPYIKWFLEKLKPEGLHQLLA
          .LGGLPGPYIKWFLEKLKPEGLHQLLA
Retrocopy VLGGLPGPYIKWFLEKLKPEGLHQLLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1207 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1207 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011021	1 retrocopy	retro_amel_476,
Canis familiaris	ENSCAFG00000031613	1 retrocopy	retro_cfam_1841,
Felis catus	ENSFCAG00000013414	1 retrocopy	retro_fcat_1776,
Microcebus murinus	ENSMICG00000013833	1 retrocopy	retro_mmur_1207 ,
Mustela putorius furo	ENSMPUG00000008868	1 retrocopy	retro_mputfur_971,
Mus musculus	ENSMUSG00000074797	3 retrocopies	retro_mmus_2063, retro_mmus_3369, retro_mmus_3604,