RetrogeneDB ID: retro_mmur_123

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1351:537275..537692(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LACTB2
• Ensembl ID: ENSMICG00000012370
• Aliases: None
• Description: lactamase, beta 2 [Source:HGNC Symbol;Acc:18512]

Sequence

>retro_mmur_123
ATGACTGCCACATTGCAGTGCATAGAACCCCTGTCCAGTCGAGTGGTGCGTGTGTTGAATTGTAACCCGGGTCTTGTCAC
CCTGCAGGGCACCAACGCCTACCTAGTGAGGACTGGCCCTAGGAAAATCCTCATTGACACTGGAGAACCAGCAATTCTAG
AATATATCAGCTGTTTAATGTAGGCTCTAACTGAATTTACCATCGCAATCCAAGAAATCACAGTGAGTAATTGGCACCAG
GATTGTTCTGGTGGCATAGGAGATATGAAAGCATCACTAATGACACTATCTATTGTATTAAAAAAATCATAGAGGAATCC
CCATAGAGAGTAAATTATAGGAAATGGAGAGCAACAATATGTTTTTCTGAAAAATAGAGATGTAATTAGGACTGAGGGAA
CCACTCTAAGAGTTGTC

Alignment

ORF - retro_mmur_123 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.14 %
• Parental protein coverage: 71.07 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAVLQRVERLSSRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAI
          M.A.LQ..E.LSSRVVRVL.CNPG..TLQGTN.YLV.TGPR.ILIDTGEPAI.EYISCL..ALTEF..AI
Retrocopy MTATLQCIEPLSSRVVRVLNCNPGLVTLQGTNAYLVRTGPRKILIDTGEPAILEYISCLM*ALTEFTIAI

Parental  QEIIVTHWHRDHTGGIEDICKSISNDTTYCIKKLPRNPHREEIIGNGEQQYVYMKDGDIIKTEGATLRVI
          QEI.V..WH.D..GGI.D...S.........KK..RNPHRE.IIGNGEQQYV..K..D.I.TEG.TLRV.
Retrocopy QEITVSNWHQDCSGGIGDMKASLMT-LSIVLKKS*RNPHRE*IIGNGEQQYVFLKNRDVIRTEGTTLRVV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_123 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_123 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000012370	1 retrocopy	retro_mmur_123 ,