RetrogeneDB ID: retro_mmur_1237

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_35131:4508..5080(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPK14
• Ensembl ID: ENSMICG00000008182
• Aliases: None
• Description: mitogen-activated protein kinase 14 [Source:HGNC Symbol;Acc:6876]

Sequence

>retro_mmur_1237
ATCCTGGACTTTTGACTGGCCTGGCATACAGATGATGAAATGACAGGCTACGCAGCCACTAAGTGGTACAGGGCTCCTGA
GATCATGCTGAACAGGATGCATTACTAATAGATTAGTTGATATTTGGGTCAGTGGGATGCATAATGTCCAAGCTGTTGAC
TGGAAGAACACTGTTTCCTGGTCTAGACTATATTGATCAGTTGAAGCTCATTTTAAGACTAGTTAGAAGGCTGGGGACTG
AGCTTTTGAAGAAAATCTCTTCAGAGTCTGCAAGAAACTATATTCAGTCTTTGACTCAGATGCTGAAGATGAACCTTGCA
GGTATATTTATTGGTGCCAATCCTTTGGGTGTTGACTTGCTGGAGAAGATGCTTGTATTGGACTCAGATAAGAGAATTAC
AGCAGACCAAACCCTTGCACATGCCTACTTTACTCAATACCATGATGCTGATGATGAGTCAGTGGCCGACCCTTACAAAA
GCAAAGACCTCCTCACAGATGAGTGGAAAAGCCTGACTTACAATGAAGTCATCAGCTTTGTGCTGCCAACCCCTTTCCAA
GAAGAGATAGAG

Alignment

ORF - retro_mmur_1237 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.59 %
• Parental protein coverage: 60.44 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY-NQTVDIW-SVGCIMAELLTGRTLFPGTDHIDQLK
          ILDF.LA.HTDDEMTGY.AT.WYRAPEIMLN.MHY.N..VDIW.SVGCIM..LLTGRTLFPG.D.IDQLK
Retrocopy ILDF*LAWHTDDEMTGYAATKWYRAPEIMLNRMHY>NRLVDIW>SVGCIMSKLLTGRTLFPGLDYIDQLK

Parental  LILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQAL
          LILRLV...G.ELLKKISSESARNYIQSLTQM.KMN.A..FIGANPL.VDLLEKMLVLDSDKRITA.Q.L
Retrocopy LILRLVRRLGTELLKKISSESARNYIQSLTQMLKMNLAGIFIGANPLGVDLLEKMLVLDSDKRITADQTL

Parental  AHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQEEME
          AHAYF.QYHD.DDE.VADPY.....S.DLL.DEWKSLTY.EVISFV.P...QEE.E
Retrocopy AHAYFTQYHDADDESVADPY----KSKDLLTDEWKSLTYNEVISFVLPTPFQEEIE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1237 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1237 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000008182	2 retrocopies	retro_mmur_1237 , retro_mmur_304,